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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8081724   pentatricopeptide repeat-containing protein At5g42310, mitochondrial 
 zma-u.5   732792   chloroplast RNA processing 1 
 osa-u.5   4343532   pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 
 ath-u.5   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.5   100808427   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 gma-u.5   100778551   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 sly-u.5   101245385   pentatricopeptide repeat-containing protein 
 vvi-u.5   100263329   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 ppo-u.5   7496866   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 ppo-u.5   7494690   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 mtr-u.5   25490300   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 

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Top 50 coexpressed genes to 8081724 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8081724 (sbi-r.1 coexpression data)

CoexMap"8081724"


sbiLOC8081724 | Entrez gene ID : 8081724    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002462984.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for XP_002462984.1)
Subcellular
localization
TargetP
chlo 5,  mito 5  (predict for XP_002462984.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8081724

.
zma-u.5
for
732792

.
osa-u.5
for
4343532

.
ath-u.5
for
AT5G42310

.
gma-u.5
for
100808427

.
gma-u.5
for
100778551

.
sly-u.5
for
101245385

.
vvi-u.5
for
100263329

.
ppo-u.5
for
7496866

.
ppo-u.5
for
7494690

.
mtr-u.5
for
25490300

.


Ortholog ID: 9713
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT5G42310 LOC100778551 LOC100808427 LOC101245385 LOC4343532 LOC732792 LOC103862617 LOC100263329 LOC7494690 LOC7496866 LOC25490300 LOC123188356 LOC123044597 LOC123425777 LOC107901451 LOC107904012 LOC106441265 LOC125585306 LOC8081724 LOC102595862 LOC102610977 LOC100821581 LOC107828998 LOC107789009
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like chloroplast RNA processing 1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein CRP1, chloroplastic pentatricopeptide repeat-containing protein CRP1, chloroplastic pentatricopeptide repeat-containing protein CRP1, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like pentatricopeptide repeat-containing protein At5g42310, mitochondrial pentatricopeptide repeat-containing protein At5g42310, mitochondrial pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein CRP1, chloroplastic uncharacterized LOC107828998 uncharacterized LOC107789009
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 2
sbi00941 Flavonoid biosynthesis 2
sbi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834236 100778551 100808427 101245385 4343532 732792 103862617 100263329 7494690 7496866 25490300 123188356 123044597 123425777 107901451 107904012 106441265 125585306 8081724 102595862 102610977 100821581 107828998 107789009
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