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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   AT1G49980   DNA/RNA polymerases superfamily protein 
 ath-u.5   AT1G49980   DNA/RNA polymerases superfamily protein 
 ath-r.7   AT1G49980   DNA/RNA polymerases superfamily protein 
 ath-m.9   AT1G49980   DNA/RNA polymerases superfamily protein 
 ath-e.2   AT1G49980   DNA/RNA polymerases superfamily protein 
 ath-m.4.bio   AT1G49980   DNA/RNA polymerases superfamily protein 
 ath-m.4.lig   AT1G49980   DNA/RNA polymerases superfamily protein 
 ath-m.4.str   AT1G49980   DNA/RNA polymerases superfamily protein 
 ath-m.4.tis   AT1G49980   DNA/RNA polymerases superfamily protein 
 bra-r.6   103871374   DNA polymerase kappa 
 bna-r.1   106349699   DNA polymerase kappa-like 
 bna-r.1   106346149   DNA polymerase kappa 
 ghi-r.1   107886941   DNA polymerase kappa 
 ghi-r.1   107908838   DNA polymerase kappa 
 cit-r.1   102631401   DNA polymerase kappa 
 gma-u.5   100816973   DNA polymerase kappa 
 vvi-u.5   100253205   DNA polymerase kappa 
 ppo-u.5   7465079   DNA polymerase kappa 
 mtr-u.5   11437908   DNA polymerase kappa 
 sly-u.5   101263644   DNA polymerase kappa 
 sot-r.1   102583515   DNA polymerase kappa 
 nta-r.1   107785261   DNA polymerase kappa-like 
 nta-r.1   107820462   DNA polymerase kappa 
 zma-u.5   100381652   uncharacterized LOC100381652 
 bdi-r.1   100839865   DNA polymerase kappa 
 cre-r.1   CHLRE_02g079850v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G49980 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G49980 (ath-m.4.hor coexpression data)

CoexMap"841422"


athAT1G49980 | Entrez gene ID : 841422      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta zma bdi cre sbi tae osa hvu
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03460 [list] [network] Fanconi anemia pathway (46 genes)
GO BP
GO:0006281 [list] [network] DNA repair  (203 genes)  IDA  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (9 genes)  IDA IMP  
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  IDA  
Protein NP_001320644.1 [sequence] [blastp]
NP_001320645.1 [sequence] [blastp]
NP_001320646.1 [sequence] [blastp]
NP_001320647.1 [sequence] [blastp]
NP_001320648.1 [sequence] [blastp]
NP_001320649.1 [sequence] [blastp]
NP_001320650.1 [sequence] [blastp]
NP_001320651.1 [sequence] [blastp]
NP_175420.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001320644.1)
nucl 4,  cyto 2,  nucl_plas 2,  chlo 1,  cysk 1  (predict for NP_001320645.1)
nucl 10  (predict for NP_001320646.1)
nucl 10  (predict for NP_001320647.1)
nucl 10  (predict for NP_001320648.1)
nucl 10  (predict for NP_001320649.1)
nucl 10  (predict for NP_001320650.1)
nucl 6,  chlo 1,  cysk 1,  cyto 1,  mito 1,  cysk_plas 1  (predict for NP_001320651.1)
nucl 9  (predict for NP_175420.3)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001320644.1)
other 6  (predict for NP_001320645.1)
other 8,  chlo 3  (predict for NP_001320646.1)
other 8,  chlo 3  (predict for NP_001320647.1)
other 8,  chlo 3  (predict for NP_001320648.1)
other 8,  chlo 3  (predict for NP_001320649.1)
other 8,  chlo 3  (predict for NP_001320650.1)
other 6  (predict for NP_001320651.1)
other 8,  chlo 3  (predict for NP_175420.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
AT1G49980
ath-u.5
for
AT1G49980
ath-r.7
for
AT1G49980
ath-m.9
for
AT1G49980
ath-e.2
for
AT1G49980
ath-m.4.bio
for
AT1G49980
ath-m.4.lig
for
AT1G49980
ath-m.4.str
for
AT1G49980
ath-m.4.tis
for
AT1G49980
bra-r.6
for
103871374
bna-r.1
for
106349699
bna-r.1
for
106346149
ghi-r.1
for
107886941
ghi-r.1
for
107908838
cit-r.1
for
102631401
gma-u.5
for
100816973
vvi-u.5
for
100253205
ppo-u.5
for
7465079
mtr-u.5
for
11437908
sly-u.5
for
101263644
sot-r.1
for
102583515
nta-r.1
for
107785261
nta-r.1
for
107820462
zma-u.5
for
100381652
bdi-r.1
for
100839865
cre-r.1
for
CHLRE_02g079850v5


Ortholog ID: 12495
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta zma bdi cre
Symbol AT1G49980 LOC103871374 LOC106349699 LOC106346149 LOC107886941 LOC107908838 LOC102631401 LOC100816973 LOC100253205 LOC7465079 LOC11437908 LOC101263644 LOC102583515 LOC107785261 LOC107820462 LOC100381652 LOC100839865 CHLRE_02g079850v5
Function* DNA/RNA polymerases superfamily protein DNA polymerase kappa DNA polymerase kappa-like DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa DNA polymerase kappa-like DNA polymerase kappa uncharacterized LOC100381652 DNA polymerase kappa uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi00190 Oxidative phosphorylation 3
ghi03460 Fanconi anemia pathway 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi00190 Oxidative phosphorylation 3
ghi03460 Fanconi anemia pathway 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 6
nta03013 Nucleocytoplasmic transport 4
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841422 103871374 106349699 106346149 107886941 107908838 102631401 100816973 100253205 7465079 11437908 101263644 102583515 107785261 107820462 100381652 100839865 5727282
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