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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   VIP5   plus-3 domain-containing protein 
 ath-u.5   VIP5   plus-3 domain-containing protein 
 ath-r.7   VIP5   plus-3 domain-containing protein 
 ath-m.9   VIP5   plus-3 domain-containing protein 
 ath-e.2   VIP5   plus-3 domain-containing protein 
 ath-m.4.bio   VIP5   plus-3 domain-containing protein 
 ath-m.4.lig   VIP5   plus-3 domain-containing protein 
 ath-m.4.str   VIP5   plus-3 domain-containing protein 
 ath-m.4.tis   VIP5   plus-3 domain-containing protein 
 bra-r.6   103830303   protein RTF1 homolog 
 bna-r.1   111205238   protein RTF1 homolog 
 bna-r.1   106406293   protein RTF1 homolog 
 bna-r.1   106422447   protein RTF1 homolog 
 ghi-r.1   107925157   protein RTF1 homolog 
 ghi-r.1   107937765   protein RTF1 homolog 
 cit-r.1   102625656   protein RTF1 homolog 
 gma-u.5   100791327   protein RTF1 homolog 
 gma-u.5   100793184   protein RTF1 homolog 
 vvi-u.5   100854406   protein RTF1 homolog 
 ppo-u.5   7490816   protein RTF1 homolog 
 ppo-u.5   7485448   protein RTF1 homolog 
 mtr-u.5   25493202   protein RTF1 homolog 
 mtr-u.5   25491764   protein RTF1 homolog 
 mtr-u.5   11421691   protein RTF1 homolog 
 sly-u.5   101265395   protein RTF1 homolog 
 sot-r.1   102602709   protein RTF1 homolog 
 nta-r.1   107766625   protein RTF1 homolog 
 nta-r.1   107774211   protein RTF1 homolog 
 osa-u.5   4352419   protein RTF1 homolog 
 zma-u.5   100279254   Protein RTF1-like protein 
 zma-u.5   100382503   uncharacterized LOC100382503 
 tae-r.2   123119827   protein RTF1 homolog 
 tae-r.2   123110823   protein RTF1 homolog 
 tae-r.2   123102640   protein RTF1 homolog 
 hvu-r.1   123452789   protein RTF1 homolog 
 sbi-r.1   8067239   protein RTF1 homolog 
 bdi-r.1   104584385   protein RTF1 homolog 
 bdi-r.1   100821735   protein RTF1 homolog 
 cre-r.1   CHLRE_03g196450v5   uncharacterized protein 

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Top 50 coexpressed genes to VIP5 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VIP5 (ath-m.4.hor coexpression data)

CoexMap"842395"


athVIP5 | Entrez gene ID : 842395      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 2 3 1 1 2 1 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009910 [list] [network] negative regulation of flower development  (50 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO CC
GO:0016593 [list] [network] Cdc73/Paf1 complex  (6 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IEA  
Protein NP_001322666.1 [sequence] [blastp]
NP_001322667.1 [sequence] [blastp]
NP_176299.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  mito 2  (predict for NP_001322666.1)
nucl 7,  mito 2  (predict for NP_001322667.1)
nucl 7,  mito 2  (predict for NP_176299.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001322666.1)
chlo 6  (predict for NP_001322667.1)
chlo 6  (predict for NP_176299.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
VIP5
ath-u.5
for
VIP5
ath-r.7
for
VIP5
ath-m.9
for
VIP5
ath-e.2
for
VIP5
ath-m.4.bio
for
VIP5
ath-m.4.lig
for
VIP5
ath-m.4.str
for
VIP5
ath-m.4.tis
for
VIP5
bra-r.6
for
103830303
bna-r.1
for
111205238
bna-r.1
for
106406293
bna-r.1
for
106422447
ghi-r.1
for
107925157
ghi-r.1
for
107937765
cit-r.1
for
102625656
gma-u.5
for
100791327
gma-u.5
for
100793184
vvi-u.5
for
100854406
ppo-u.5
for
7490816
ppo-u.5
for
7485448
mtr-u.5
for
25493202
mtr-u.5
for
25491764
mtr-u.5
for
11421691
sly-u.5
for
101265395
sot-r.1
for
102602709
nta-r.1
for
107766625
nta-r.1
for
107774211
osa-u.5
for
4352419
zma-u.5
for
100279254
zma-u.5
for
100382503
tae-r.2
for
123119827
tae-r.2
for
123110823
tae-r.2
for
123102640
hvu-r.1
for
123452789
sbi-r.1
for
8067239
bdi-r.1
for
104584385
bdi-r.1
for
100821735
cre-r.1
for
CHLRE_03g196450v5


Ortholog ID: 6428
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi bdi cre
Symbol VIP5 LOC103830303 LOC111205238 LOC106406293 LOC106422447 LOC107925157 LOC107937765 LOC102625656 LOC100791327 LOC100793184 LOC100854406 LOC7490816 LOC7485448 LOC25493202 LOC25491764 LOC11421691 LOC101265395 LOC102602709 LOC107766625 LOC107774211 LOC4352419 LOC100279254 LOC100382503 LOC123119827 LOC123110823 LOC123102640 LOC123452789 LOC8067239 LOC104584385 LOC100821735 CHLRE_03g196450v5
Function* plus-3 domain-containing protein protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog Protein RTF1-like protein uncharacterized LOC100382503 protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00760 Nicotinate and nicotinamide metabolism 2
bna01240 Biosynthesis of cofactors 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma04120 Ubiquitin mediated proteolysis 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842395 103830303 111205238 106406293 106422447 107925157 107937765 102625656 100791327 100793184 100854406 7490816 7485448 25493202 25491764 11421691 101265395 102602709 107766625 107774211 4352419 100279254 100382503 123119827 123110823 123102640 123452789 8067239 104584385 100821735 5718762
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