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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   104584385   protein RTF1 homolog 
 bdi-r.1   100821735   protein RTF1 homolog 
 tae-r.2   123110823   protein RTF1 homolog 
 tae-r.2   123102640   protein RTF1 homolog 
 tae-r.2   123119827   protein RTF1 homolog 
 hvu-r.1   123452789   protein RTF1 homolog 
 osa-u.5   4352419   protein RTF1 homolog 
 zma-u.5   100382503   uncharacterized LOC100382503 
 zma-u.5   100279254   Protein RTF1-like protein 
 sbi-r.1   8067239   protein RTF1 homolog 
 ath-u.5   VIP5   plus-3 domain-containing protein 
 gma-u.5   100818650   protein RTF1 homolog 
 sly-u.5   101265395   protein RTF1 homolog 
 bra-r.6   103830303   protein RTF1 homolog 
 vvi-u.5   100854406   protein RTF1 homolog 
 ppo-u.5   7485448   protein RTF1 homolog 
 ppo-u.5   7490816   protein RTF1 homolog 
 mtr-u.5   11421691   protein RTF1 homolog 
 mtr-u.5   25491764   protein RTF1 homolog 
 mtr-u.5   25493202   protein RTF1 homolog 
 ghi-r.1   107925157   protein RTF1 homolog 
 ghi-r.1   107937765   protein RTF1 homolog 
 bna-r.1   106406293   protein RTF1 homolog 
 bna-r.1   106422447   protein RTF1 homolog 
 bna-r.1   111205238   protein RTF1 homolog 
 sot-r.1   102602709   protein RTF1 homolog 
 cit-r.1   102625656   protein RTF1 homolog 
 nta-r.1   107774211   protein RTF1 homolog 
 nta-r.1   107766625   protein RTF1 homolog 
 cre-r.1   CHLRE_03g196450v5   uncharacterized protein 

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Top 50 coexpressed genes to 104584385 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104584385 (bdi-r.1 coexpression data)

CoexMap"104584385"


bdiLOC104584385 | Entrez gene ID : 104584385      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 1 1 2 1 1 1 1 1 1 2 3 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0016593 [list] [network] Cdc73/Paf1 complex  (9 genes)  IEA  
GO MF
GO:1990269 [list] [network] RNA polymerase II C-terminal domain phosphoserine binding  (5 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1744 genes)  IEA  
Protein XP_010237206.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  nucl 2,  cyto_mito 2,  nucl_plas 2  (predict for XP_010237206.1)
Subcellular
localization
TargetP
other 8  (predict for XP_010237206.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
104584385
bdi-r.1
for
100821735
tae-r.2
for
123110823
tae-r.2
for
123102640
tae-r.2
for
123119827
hvu-r.1
for
123452789
osa-u.5
for
4352419
zma-u.5
for
100382503
zma-u.5
for
100279254
sbi-r.1
for
8067239
ath-u.5
for
VIP5
gma-u.5
for
100818650
sly-u.5
for
101265395
bra-r.6
for
103830303
vvi-u.5
for
100854406
ppo-u.5
for
7485448
ppo-u.5
for
7490816
mtr-u.5
for
11421691
mtr-u.5
for
25491764
mtr-u.5
for
25493202
ghi-r.1
for
107925157
ghi-r.1
for
107937765
bna-r.1
for
106406293
bna-r.1
for
106422447
bna-r.1
for
111205238
sot-r.1
for
102602709
cit-r.1
for
102625656
nta-r.1
for
107774211
nta-r.1
for
107766625
cre-r.1
for
CHLRE_03g196450v5


Ortholog ID: 6428
Species bdi bdi tae tae tae hvu osa zma zma sbi ath gma gma sly bra vvi ppo ppo mtr mtr mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC104584385 LOC100821735 LOC123110823 LOC123102640 LOC123119827 LOC123452789 LOC4352419 LOC100382503 LOC100279254 LOC8067239 VIP5 LOC100793184 LOC100791327 LOC101265395 LOC103830303 LOC100854406 LOC7485448 LOC7490816 LOC11421691 LOC25491764 LOC25493202 LOC107925157 LOC107937765 LOC106406293 LOC106422447 LOC111205238 LOC102602709 LOC102625656 LOC107774211 LOC107766625 CHLRE_03g196450v5
Function* protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog uncharacterized LOC100382503 Protein RTF1-like protein protein RTF1 homolog plus-3 domain-containing protein protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma04120 Ubiquitin mediated proteolysis 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00760 Nicotinate and nicotinamide metabolism 2
bna01240 Biosynthesis of cofactors 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 104584385 100821735 123110823 123102640 123119827 123452789 4352419 100382503 100279254 8067239 842395 100793184 100791327 101265395 103830303 100854406 7485448 7490816 11421691 25491764 25493202 107925157 107937765 106406293 106422447 111205238 102602709 102625656 107774211 107766625 5718762
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