Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106422447   protein RTF1 homolog 
 ath-u.5   VIP5   plus-3 domain-containing protein 
 gma-u.5   100818650   protein RTF1 homolog 
 vvi-u.5   100854406   protein RTF1 homolog 
 ppo-u.5   7485448   protein RTF1 homolog 
 ppo-u.5   7490816   protein RTF1 homolog 
 mtr-u.5   11421691   protein RTF1 homolog 
 mtr-u.5   25491764   protein RTF1 homolog 
 mtr-u.5   25493202   protein RTF1 homolog 
 sly-u.5   101265395   protein RTF1 homolog 
 osa-u.5   4352419   protein RTF1 homolog 
 zma-u.5   100382503   uncharacterized LOC100382503 
 zma-u.5   100279254   Protein RTF1-like protein 

close


Top 50 coexpressed genes to 106422447 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 106422447 (bna-r.1 coexpression data)

CoexMap"106422447"


bnaLOC106422447 | Entrez gene ID : 106422447    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 1 1 2 3 1 1 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0016593 [list] [network] Cdc73/Paf1 complex  (20 genes)  IEA  
GO MF
GO:1990269 [list] [network] RNA polymerase II C-terminal domain phosphoserine binding  (9 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048601760.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_048601760.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_048601760.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106422447

.
ath-u.5
for
VIP5

.
gma-u.5
for
100818650

.
vvi-u.5
for
100854406

.
ppo-u.5
for
7485448

.
ppo-u.5
for
7490816

.
mtr-u.5
for
11421691

.
mtr-u.5
for
25491764

.
mtr-u.5
for
25493202

.
sly-u.5
for
101265395

.
osa-u.5
for
4352419

.
zma-u.5
for
100382503

.
zma-u.5
for
100279254

.


Ortholog ID: 6428
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol VIP5 LOC100791327 LOC100793184 LOC101265395 LOC4352419 LOC100382503 LOC100279254 LOC103830303 LOC100854406 LOC7490816 LOC7485448 LOC25491764 LOC25493202 LOC123110823 LOC123102640 LOC123452789 LOC107925157 LOC107937765 LOC111205238 LOC106406293 CHLRE_03g196450v5 LOC8067239 LOC102602709 LOC102625656 LOC104584385 LOC100821735 LOC107774211 LOC107766625
Function* plus-3 domain-containing protein protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog uncharacterized LOC100382503 Protein RTF1-like protein protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog uncharacterized protein protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog protein RTF1 homolog
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma04120 Ubiquitin mediated proteolysis 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00760 Nicotinate and nicotinamide metabolism 2
bna01240 Biosynthesis of cofactors 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842395 100791327 100793184 101265395 4352419 100382503 100279254 103830303 100854406 7490816 7485448 25491764 25493202 123110823 123102640 123452789 107925157 107937765 111205238 106406293 5718762 8067239 102602709 102625656 104584385 100821735 107774211 107766625
The preparation time of this page was 0.1 [sec].