ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	psbA	photosystem II protein D1
zma-u.5	psbA	photosystem II protein D1
zma-u.5	118473630	photosystem II protein D1
osa-u.5	psbA	photosystem II protein D1
tae-r.2	123086034	photosystem II protein D1-like
tae-r.2	123188632	photosystem II protein D1-like
tae-r.2	123181322	photosystem II protein D1
hvu-r.1	123421501	photosystem II protein D1
hvu-r.1	123421744	photosystem II protein D1
hvu-r.1	123421773	photosystem II protein D1
bdi-r.1	psbA	photosystem II protein D1
ath-u.5	psbA	photosystem II protein D1
gma-u.5	psbA	photosystem II protein D1
sly-u.5	psbA	photosystem II protein D1
bra-r.6	117129783	photosystem II protein D1
bra-r.6	117126229	photosystem II protein D1
vvi-u.5	psbA	PSII 32 kDa protein
ppo-u.5	psbA	photosystem II protein D1
mtr-u.5	120577103	photosystem II protein D1
mtr-u.5	120580075	photosystem II protein D1
mtr-u.5	120580929	photosystem II protein D1
ghi-r.1	121226481	photosystem II protein D1
ghi-r.1	121227929	photosystem II protein D1
ghi-r.1	psbA	photosystem II protein D1
bna-r.1	125602600	photosystem II protein D1
bna-r.1	125602694	photosystem II protein D1
bna-r.1	125602611	photosystem II protein D1
sot-r.1	psbA	photosystem II protein D1
cit-r.1	psbA	photosystem II protein D1
nta-r.1	psbA	photosystem II protein D1

Annotation

functional annotation

KEGG

sbi00195 [list] [network] Photosynthesis (76 genes)

GO BP

GO CC

GO MF

Protein

YP_899387.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 5, golg 2, vacu 1, E.R. 1, E.R._vacu 1

(predict for YP_899387.1)

Subcellular
localization
TargetP

mito 7, other 6

(predict for YP_899387.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for psbA	zma-u.5 for psbA	zma-u.5 for 118473630	osa-u.5 for psbA	tae-r.2 for 123086034	tae-r.2 for 123188632	tae-r.2 for 123181322	hvu-r.1 for 123421501	hvu-r.1 for 123421744	hvu-r.1 for 123421773	bdi-r.1 for psbA	ath-u.5 for psbA	gma-u.5 for psbA	sly-u.5 for psbA	bra-r.6 for 117129783	bra-r.6 for 117126229	vvi-u.5 for psbA	ppo-u.5 for psbA	mtr-u.5 for 120577103	mtr-u.5 for 120580075	mtr-u.5 for 120580929	ghi-r.1 for 121226481	ghi-r.1 for 121227929	ghi-r.1 for psbA	bna-r.1 for 125602600	bna-r.1 for 125602694	bna-r.1 for 125602611	sot-r.1 for psbA	cit-r.1 for psbA	nta-r.1 for psbA

Ortholog

Ortholog ID: 964

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

psbA

psbA

psbA

psbA

psbA

psbA

psbA

Function^*

photosystem II protein D1

PSII 32 kDa protein

photosystem II protein D1

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	7
sbi03010	Ribosome	7
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	4
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	6
zma00195	Photosynthesis	5
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	4
zma00195	Photosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	12
osa00190	Oxidative phosphorylation	6
osa03010	Ribosome	5
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	20
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00195	Photosynthesis	8
bdi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	15
ath00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00195	Photosynthesis	14
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00195	Photosynthesis	14
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	6
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	6
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	12
vvi03010	Ribosome	5
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi00710	Carbon fixation by Calvin cycle	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	12
vvi03010	Ribosome	5
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi00710	Carbon fixation by Calvin cycle	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	13
ppo00190	Oxidative phosphorylation	5
ppo00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	10
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	7
ghi03010	Ribosome	3
ghi00970	Aminoacyl-tRNA biosynthesis	3
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	8
ghi03010	Ribosome	4
ghi00970	Aminoacyl-tRNA biosynthesis	3
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	8
ghi03010	Ribosome	4
ghi00970	Aminoacyl-tRNA biosynthesis	3
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	7
sot03010	Ribosome	5
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	12
cit00190	Oxidative phosphorylation	3
cit00630	Glyoxylate and dicarboxylate metabolism	2
cit00710	Carbon fixation by Calvin cycle	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	16
nta00190	Oxidative phosphorylation	4

Expression

Expression pattern

Entrez Gene ID^*

4549136

845199

118473630

118475933

3131409

123181322

123123282

123176984

123422976

123419406

123418890

6439798

844802

3989259

3950408

117129783

117126229

7498542

4025118

4929629

120577103

120580929

5333175

121226481

121227929

3989229

125602600

125604865

125602599

4099946

4271240

800514

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to psbA (sbi-r.1 coexpression data)

Top 50 enrichment test to psbA (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	2	1	3	3	1	1	1	1	2	1	1	3	3	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to psbA (sbi-r.1 coexpression data)

Top 50 enrichment test to psbA (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**