ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
hvu-r.1	123421744	photosystem II protein D1
hvu-r.1	123423640	photosystem II protein D1
hvu-r.1	123420951	photosystem II protein D1
hvu-r.1	123421501	photosystem II protein D1
tae-r.2	123157757	photosystem II protein D1-like
tae-r.2	123056109	photosystem II protein D1
tae-r.2	123188632	photosystem II protein D1-like
bdi-r.1	psbA	photosystem II protein D1
osa-u.5	psbA	photosystem II protein D1
zma-u.5	118475436	photosystem II protein D1
sbi-r.1	psbA	photosystem II protein D1
ath-u.5	psbA	photosystem II protein D1
gma-u.5	psbA	photosystem II protein D1
sly-u.5	psbA	photosystem II protein D1
bra-r.6	117126229	photosystem II protein D1
bra-r.6	117129783	photosystem II protein D1
ppo-u.5	psbA	photosystem II protein D1
mtr-u.5	120580929	photosystem II protein D1
mtr-u.5	120577103	photosystem II protein D1
mtr-u.5	psbA	photosystem II protein D1
ghi-r.1	121227929	photosystem II protein D1
ghi-r.1	psbA	photosystem II protein D1
ghi-r.1	121226481	photosystem II protein D1
bna-r.1	125602695	photosystem II protein D1
bna-r.1	125602694	photosystem II protein D1
bna-r.1	125602611	photosystem II protein D1
sot-r.1	psbA	photosystem II protein D1
cit-r.1	psbA	photosystem II protein D1
nta-r.1	psbA	photosystem II protein D1

Top 50 coexpressed genes to 123421744 (hvu-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123421744 (hvu-r.1 coexpression data)

CoexMap"123421744"

[Cytoscape]

Annotation

functional annotation

KEGG

hvg00195 [list] [network] Photosynthesis (289 genes)

GO BP

GO:0009772 [list] [network] photosynthetic electron transport in photosystem II	(60 genes)	IEA
GO:0019684 [list] [network] photosynthesis, light reaction	(115 genes)	IEA

GO CC

GO:0009523 [list] [network] photosystem II	(85 genes)	IEA
GO:0009535 [list] [network] chloroplast thylakoid membrane	(185 genes)	IEA

GO MF

Protein

XP_044963525.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, cyto_plas 4, golg 2, E.R. 1

(predict for XP_044963525.1)

Subcellular
localization
TargetP

mito 7, other 6

(predict for XP_044963525.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123421744	hvu-r.1 for 123423640	hvu-r.1 for 123420951	hvu-r.1 for 123421501	tae-r.2 for 123157757	tae-r.2 for 123056109	tae-r.2 for 123188632	bdi-r.1 for psbA	osa-u.5 for psbA	zma-u.5 for 118475436	sbi-r.1 for psbA	ath-u.5 for psbA	gma-u.5 for psbA	sly-u.5 for psbA	bra-r.6 for 117126229	bra-r.6 for 117129783	ppo-u.5 for psbA	mtr-u.5 for 120580929	mtr-u.5 for 120577103	mtr-u.5 for psbA	ghi-r.1 for 121227929	ghi-r.1 for psbA	ghi-r.1 for 121226481	bna-r.1 for 125602695	bna-r.1 for 125602694	bna-r.1 for 125602611	sot-r.1 for psbA	cit-r.1 for psbA	nta-r.1 for psbA

Ortholog

Ortholog ID: 964

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

psbA

psbA

psbA

psbA

psbA

psbA

Function^*

photosystem II protein D1

PSII 32 kDa protein

photosystem II protein D1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	20
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00195	Photosynthesis	8
bdi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	12
osa00190	Oxidative phosphorylation	6
osa03010	Ribosome	5
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	6
zma00195	Photosynthesis	5
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	4
zma00195	Photosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	4
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	7
sbi03010	Ribosome	7
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	15
ath00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00195	Photosynthesis	14
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00195	Photosynthesis	14
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	6
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	6
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	12
vvi03010	Ribosome	5
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi00710	Carbon fixation by Calvin cycle	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	12
vvi03010	Ribosome	5
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi00710	Carbon fixation by Calvin cycle	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	13
ppo00190	Oxidative phosphorylation	5
ppo00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	10
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	8
ghi03010	Ribosome	4
ghi00970	Aminoacyl-tRNA biosynthesis	3
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	8
ghi03010	Ribosome	4
ghi00970	Aminoacyl-tRNA biosynthesis	3
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	7
ghi03010	Ribosome	3
ghi00970	Aminoacyl-tRNA biosynthesis	3
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	7
sot03010	Ribosome	5
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	12
cit00190	Oxidative phosphorylation	3
cit00630	Glyoxylate and dicarboxylate metabolism	2
cit00710	Carbon fixation by Calvin cycle	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	16
nta00190	Oxidative phosphorylation	4

Expression

Expression pattern

Entrez Gene ID^*

123422976

123419406

123418890

123181322

123176984

123123282

6439798

3131409

118473630

118475933

845199

4549136

844802

3989259

3950408

117126229

117129783

4025118

7498542

4929629

120580929

120577103

5333175

121227929

3989229

121226481

125602600

125604865

125602599

4099946

4271240

800514

The preparation time of this page was 0.2 [sec].


Species	hvu	tae	bdi	osa	zma	sbi	ath	gma	sly	bra	ppo	mtr	ghi	bna	sot	cit	nta	cre	vvi
Paralog	4	3	1	1	1	1	1	1	1	2	1	3	3	3	1	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123421744 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123421744 (hvu-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**