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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8055115   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 zma-u.5   100272517   ATP-dependent Clp protease proteolytic subunit 
 osa-u.5   4349523   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 tae-r.2   123126827   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 tae-r.2   123181518   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 tae-r.2   123050969   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 hvu-r.1   123437162   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 bdi-r.1   100824309   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ath-u.5   CLPP4   CLP protease P4 
 gma-u.5   100814084   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 gma-u.5   100812280   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 sly-u.5   101267919   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 bra-r.6   103827802   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 vvi-u.5   100254000   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ppo-u.5   7491906   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 mtr-u.5   11409952   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ghi-r.1   107930114   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ghi-r.1   107900718   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 bna-r.1   106386411   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 bna-r.1   106375386   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 sot-r.1   102605723   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 cit-r.1   102625246   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 nta-r.1   107765360   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 nta-r.1   107785710   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 cre-r.1   CHLRE_12g500950v5   uncharacterized protein 

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Top 50 coexpressed genes to 8055115 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8055115 (sbi-r.1 coexpression data)

CoexMap"8055115"


sbiLOC8055115 | Entrez gene ID : 8055115      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 1 1 3 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006515 [list] [network] protein quality control for misfolded or incompletely synthesized proteins  (16 genes)  IEA  
GO CC
GO:0009368 [list] [network] endopeptidase Clp complex  (10 genes)  IEA  
GO MF
GO:0051117 [list] [network] ATPase binding  (13 genes)  IEA  
GO:0004176 [list] [network] ATP-dependent peptidase activity  (26 genes)  IEA  
GO:0004252 [list] [network] serine-type endopeptidase activity  (118 genes)  IEA  
Protein XP_002467416.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002467416.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002467416.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8055115
zma-u.5
for
100272517
osa-u.5
for
4349523
tae-r.2
for
123126827
tae-r.2
for
123181518
tae-r.2
for
123050969
hvu-r.1
for
123437162
bdi-r.1
for
100824309
ath-u.5
for
CLPP4
gma-u.5
for
100814084
gma-u.5
for
100812280
sly-u.5
for
101267919
bra-r.6
for
103827802
vvi-u.5
for
100254000
ppo-u.5
for
7491906
mtr-u.5
for
11409952
ghi-r.1
for
107930114
ghi-r.1
for
107900718
bna-r.1
for
106386411
bna-r.1
for
106375386
sot-r.1
for
102605723
cit-r.1
for
102625246
nta-r.1
for
107765360
nta-r.1
for
107785710
cre-r.1
for
CHLRE_12g500950v5


Ortholog ID: 10361
Species sbi zma osa tae tae tae hvu bdi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC8055115 LOC100272517 LOC4349523 LOC123126827 LOC123181518 LOC123050969 LOC123437162 LOC100824309 CLPP4 LOC100814084 LOC100812280 LOC101267919 LOC103827802 LOC100254000 LOC7491906 LOC11409952 LOC107930114 LOC107900718 LOC106386411 LOC106375386 LOC102605723 LOC102625246 LOC107765360 LOC107785710 CHLRE_12g500950v5
Function* ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic CLP protease P4 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae00020 Citrate cycle (TCA cycle) 3
tae00620 Pyruvate metabolism 3
tae00785 Lipoic acid metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo00290 Valine, leucine and isoleucine biosynthesis 2
ppo00660 C5-Branched dibasic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi03010 Ribosome 2
ghi00730 Thiamine metabolism 2
ghi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi03010 Ribosome 2
ghi00730 Thiamine metabolism 2
ghi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna00906 Carotenoid biosynthesis 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna00906 Carotenoid biosynthesis 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 4
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00620 Pyruvate metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8055115 100272517 4349523 123126827 123181518 123050969 123437162 100824309 834575 100814084 100812280 101267919 103827802 100254000 7491906 11409952 107930114 107900718 106386411 106375386 102605723 102625246 107765360 107785710 5716386
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