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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8056409   transcription factor PIF5 
 zma-u.5   100193167   uncharacterized LOC100193167 
 zma-u.5   100216625   uncharacterized LOC100216625 
 osa-u.5   9269153   transcription factor SPATULA 
 osa-u.5   4340229   transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like 
 tae-r.2   123156274   transcription factor PIF3 
 tae-r.2   123128873   transcription factor PIF1 
 tae-r.2   123139398   uncharacterized LOC123139398 
 hvu-r.1   123407232   transcription factor PIF3-like 
 hvu-r.1   123406162   transcription factor APG-like 
 bdi-r.1   100834520   transcription factor SPATULA 
 ath-u.5   SPT   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   102668194   transcription factor ALC 
 gma-u.5   100806962   transcription factor SPATULA 
 gma-u.5   100797351   transcription factor SPATULA 
 sly-u.5   ALC   transcription factor ALC 
 sly-u.5   SPT   transcription factor SPATULA 
 bra-r.6   103829540   transcription factor ALC 
 vvi-u.5   100245419   transcription factor SPATULA 
 vvi-u.5   100245665   transcription factor SPATULA 
 ppo-u.5   7462871   transcription factor SPATULA 
 ppo-u.5   18104866   transcription factor SPATULA 
 mtr-u.5   11415523   transcription factor SPATULA 
 mtr-u.5   11414235   transcription factor ALC 
 ghi-r.1   107958137   transcription factor SPATULA 
 ghi-r.1   107945713   transcription factor SPATULA 
 ghi-r.1   107925129   transcription factor SPATULA 
 bna-r.1   106355317   transcription factor ALC-like 
 sot-r.1   102591818   transcription factor SPATULA-like 
 sot-r.1   102578586   transcription factor SPATULA 
 cit-r.1   102629932   transcription factor ALC-like 
 cit-r.1   102617525   transcription factor SPATULA 
 nta-r.1   107787554   uncharacterized LOC107787554 
 nta-r.1   107807290   uncharacterized LOC107807290 

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Top 50 coexpressed genes to 8056409 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8056409 (sbi-r.1 coexpression data)

CoexMap"8056409"


sbiLOC8056409 | Entrez gene ID : 8056409    
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 2 2 3 2 1 1 3 2 1 2 2 2 3 1 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi04075 [list] [network] Plant hormone signal transduction (389 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (479 genes)  IEA  
Protein XP_002454736.2 [sequence] [blastp]
XP_021315410.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_002454736.2)
nucl 9  (predict for XP_021315410.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for XP_002454736.2)
other 6,  chlo 3  (predict for XP_021315410.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8056409
zma-u.5
for
100193167
zma-u.5
for
100216625
osa-u.5
for
9269153
osa-u.5
for
4340229
tae-r.2
for
123156274
tae-r.2
for
123128873
tae-r.2
for
123139398
hvu-r.1
for
123407232
hvu-r.1
for
123406162
bdi-r.1
for
100834520
ath-u.5
for
SPT
gma-u.5
for
102668194
gma-u.5
for
100806962
gma-u.5
for
100797351
sly-u.5
for
ALC
sly-u.5
for
SPT
bra-r.6
for
103829540
vvi-u.5
for
100245419
vvi-u.5
for
100245665
ppo-u.5
for
7462871
ppo-u.5
for
18104866
mtr-u.5
for
11415523
mtr-u.5
for
11414235
ghi-r.1
for
107958137
ghi-r.1
for
107945713
ghi-r.1
for
107925129
bna-r.1
for
106355317
sot-r.1
for
102591818
sot-r.1
for
102578586
cit-r.1
for
102629932
cit-r.1
for
102617525
nta-r.1
for
107787554
nta-r.1
for
107807290


Ortholog ID: 2576
Species sbi zma zma osa osa tae tae tae hvu hvu bdi ath gma gma gma sly sly bra vvi vvi ppo ppo mtr mtr ghi ghi ghi bna sot sot cit cit nta nta
Symbol LOC8056409 LOC100193167 LOC100216625 LOC9269153 LOC4340229 LOC123156274 LOC123128873 LOC123146019 LOC123407232 LOC123406162 LOC100834520 SPT LOC102668194 LOC100806962 LOC100793754 ALC SPT LOC103829540 LOC100245419 LOC100245665 LOC7462871 LOC18104866 LOC11415523 LOC11414235 LOC107913239 LOC107905585 LOC121217104 LOC106390344 LOC102591818 LOC102578586 LOC102629932 LOC102617525 LOC107787554 LOC107807290
Function* transcription factor PIF5 uncharacterized LOC100193167 uncharacterized LOC100216625 transcription factor SPATULA transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like transcription factor PIF3 transcription factor PIF1 transcription factor SPATULA transcription factor PIF3-like transcription factor APG-like transcription factor SPATULA basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor ALC transcription factor SPATULA transcription factor SPATULA transcription factor ALC transcription factor SPATULA transcription factor ALC transcription factor SPATULA transcription factor SPATULA transcription factor SPATULA transcription factor SPATULA transcription factor SPATULA transcription factor ALC transcription factor ALC transcription factor SPATULA transcription factor SPATULA-like transcription factor ALC transcription factor SPATULA-like transcription factor SPATULA transcription factor ALC-like transcription factor SPATULA uncharacterized LOC107787554 uncharacterized LOC107807290
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa02010 ABC transporters 2
osa04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa01240 Biosynthesis of cofactors 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae04075 Plant hormone signal transduction 3
tae04814 Motor proteins 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae00062 Fatty acid elongation 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae04075 Plant hormone signal transduction 3
tae00062 Fatty acid elongation 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00030 Pentose phosphate pathway 2
hvu00480 Glutathione metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00430 Taurine and hypotaurine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath00630 Glyoxylate and dicarboxylate metabolism 3
ath01230 Biosynthesis of amino acids 3
ath00220 Arginine biosynthesis 2
ath00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00020 Citrate cycle (TCA cycle) 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
gma01210 2-Oxocarboxylic acid metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 7
gma04626 Plant-pathogen interaction 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
gma01230 Biosynthesis of amino acids 3
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00020 Citrate cycle (TCA cycle) 4
sly01200 Carbon metabolism 4
sly01210 2-Oxocarboxylic acid metabolism 3
sly00760 Nicotinate and nicotinamide metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 2
ppo03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 4
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi00051 Fructose and mannose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi00051 Fructose and mannose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 5
sot01200 Carbon metabolism 5
sot01210 2-Oxocarboxylic acid metabolism 4
sot01230 Biosynthesis of amino acids 3
sot00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot01240 Biosynthesis of cofactors 2
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01212 Fatty acid metabolism 3
nta00061 Fatty acid biosynthesis 2
nta00280 Valine, leucine and isoleucine degradation 2
nta04075 Plant hormone signal transduction 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
nta00061 Fatty acid biosynthesis 2
nta00280 Valine, leucine and isoleucine degradation 2
nta01212 Fatty acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8056409 100193167 100216625 9269153 4340229 123156274 123128873 123146019 123407232 123406162 100834520 829847 102668194 100806962 100793754 101259435 101266791 103829540 100245419 100245665 7462871 18104866 11415523 11414235 107913239 107905585 121217104 106390344 102591818 102578586 102629932 102617525 107787554 107807290
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