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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1  8057680  MADS-box transcription factor 17 
 sbi-r.1  8076029  MADS-box transcription factor 6 
 zma-u.5  542256  bearded-ear 1 
 zma-u.5  542709  MADS box protein 
 osa-u.5  4330328  MADS-box transcription factor 6-like 
 tae-r.2  123128010  MADS-box transcription factor 6 
 tae-r.2  123145106  MADS-box transcription factor 6 
 tae-r.2  542777  MADS-box transcription factor 6 
 bdi-r.1  AGL6  MADS-box transcription factor 6 
 gma-u.5  100820061  agamous-like MADS-box protein MADS3 
 gma-u.5  100810549  agamous-like MADS-box protein MADS3 
 sly-u.5  AGL6  AGAMOUS-like MADS-box protein AGL6 
 vvi-u.5  100256085  agamous-like MADS-box protein MADS3 
 vvi-u.5  MADS3  MADS-box protein 3 
 ghi-r.1  107962142  MADS-box transcription factor 6 
 ghi-r.1  107887228  agamous-like MADS-box protein MADS3 
 ghi-r.1  107911932  agamous-like MADS-box protein MADS3 
 sot-r.1  102602212  MADS-box transcription factor 6 
 cit-r.1  102613709  agamous-like MADS-box protein MADS3 
 cit-r.1  127901454  agamous-like MADS-box protein MADS3 
 nta-r.1  107821033  protein AGAMOUS-LIKE 6-like 
 nta-r.1  107818774  protein AGAMOUS-LIKE 6 

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Top 50 coexpressed genes to 8057680 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8057680 (sbi-r.1 coexpression data)

CoexMap"8057680"


sbiLOC8057680 | Entrez gene ID : 8057680
Species sbi zma osa tae bdi gma sly vvi ghi sot cit nta cre bra ppo ath mtr hvu bna
Paralog 2 2 1 3 1 2 1 2 3 1 2 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (109 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (203 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (251 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (479 genes)  IEA  
Protein XP_021318119.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_021318119.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_021318119.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

sbi-r.1
for
8057680


sbi-r.1
for
8076029


zma-u.5
for
542256


zma-u.5
for
542709


osa-u.5
for
4330328


tae-r.2
for
123128010


tae-r.2
for
123145106


tae-r.2
for
542777


bdi-r.1
for
AGL6


gma-u.5
for
100820061


gma-u.5
for
100810549


sly-u.5
for
AGL6


vvi-u.5
for
100256085


vvi-u.5
for
MADS3


ghi-r.1
for
107962142


ghi-r.1
for
107887228


ghi-r.1
for
107911932


sot-r.1
for
102602212


cit-r.1
for
102613709


cit-r.1
for
127901454


nta-r.1
for
107821033


nta-r.1
for
107818774



Ortholog ID: 4707
Species sbi sbi zma zma osa tae tae tae bdi gma gma sly vvi vvi ghi ghi ghi sot cit cit nta nta
Symbol LOC8057680 LOC8076029 LOC542256 LOC542709 LOC4330328 LOC123128010 LOC123145106 LOC542777 AGL6 LOC100820061 LOC100810549 AGL6 LOC100256085 MADS3 LOC107962142 LOC121221192 LOC107957285 LOC102602212 LOC102613709 LOC127901454 LOC107821033 LOC107818774
Function* MADS-box transcription factor 17 MADS-box transcription factor 6 bearded-ear 1 MADS box protein MADS-box transcription factor 6-like MADS-box transcription factor 6 MADS-box transcription factor 6 MADS-box transcription factor 6 MADS-box transcription factor 6 agamous-like MADS-box protein MADS3 agamous-like MADS-box protein MADS3 AGAMOUS-like MADS-box protein AGL6 agamous-like MADS-box protein MADS3 MADS-box protein 3 MADS-box transcription factor 6 MADS-box transcription factor 6 agamous-like MADS-box protein AGL6 MADS-box transcription factor 6 agamous-like MADS-box protein MADS3 agamous-like MADS-box protein MADS3 protein AGAMOUS-LIKE 6-like protein AGAMOUS-LIKE 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8057680 8076029 542256 542709 4330328 123128010 123145106 542777 100822235 100820061 100810549 101268317 100256085 100232868 107962142 121221192 107957285 102602212 102613709 127901454 107821033 107818774
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