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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5  4330328  MADS-box transcription factor 6-like 
 osa-r.6  4330328  MADS-box transcription factor 6-like 
 osa-m.8  4330328  MADS-box transcription factor 6-like 
 osa-e.1  4330328  MADS-box transcription factor 6-like 
 zma-u.5  542256  bearded-ear 1 
 zma-u.5  542709  MADS box protein 
 gma-u.5  100820061  agamous-like MADS-box protein MADS3 
 gma-u.5  100810549  agamous-like MADS-box protein MADS3 
 sly-u.5  AGL6  AGAMOUS-like MADS-box protein AGL6 
 vvi-u.5  100256085  agamous-like MADS-box protein MADS3 
 vvi-u.5  MADS3  MADS-box protein 3 

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Top 50 coexpressed genes to 4330328 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4330328 (osa-u.5 coexpression data)

CoexMap"4330328"


osaLOC4330328 | Entrez gene ID : 4330328
Species osa zma gma sly vvi bdi mtr bra hvu cit bna ath ppo sbi ghi sot nta cre tae
Paralog 4 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (110 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3003 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (221 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (257 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (464 genes)  IEA  
Protein NP_001388850.1 [sequence] [blastp]
XP_066163137.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001388850.1)
nucl 10  (predict for XP_066163137.1)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for NP_001388850.1)
other 8,  mito 4  (predict for XP_066163137.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

osa-u.5
for
4330328


osa-r.6
for
4330328


osa-m.8
for
4330328


osa-e.1
for
4330328


zma-u.5
for
542256


zma-u.5
for
542709


gma-u.5
for
100820061


gma-u.5
for
100810549


sly-u.5
for
AGL6


vvi-u.5
for
100256085


vvi-u.5
for
MADS3



Ortholog ID: 4707
Species osa tae tae bdi zma zma sbi sbi gma gma sly vvi vvi ghi ghi sot cit nta nta
Symbol LOC4330328 LOC542777 LOC123145106 AGL6 LOC542256 LOC542709 LOC8057680 LOC8076029 LOC100810549 LOC100820061 AGL6 LOC100256085 MADS3 LOC107962142 LOC107957285 LOC102602212 LOC127901454 LOC107818774 LOC107821033
Function* MADS-box transcription factor 6-like MADS-box transcription factor 6 MADS-box transcription factor 6 MADS-box transcription factor 6 bearded-ear 1 MADS box protein MADS-box transcription factor 17 MADS-box transcription factor 6 agamous-like MADS-box protein MADS3 agamous-like MADS-box protein MADS3 AGAMOUS-like MADS-box protein AGL6 agamous-like MADS-box protein MADS3 MADS-box protein 3 MADS-box transcription factor 6 agamous-like MADS-box protein AGL6 MADS-box transcription factor 6 agamous-like MADS-box protein MADS3 protein AGAMOUS-LIKE 6 protein AGAMOUS-LIKE 6-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4330328 542777 123145106 100822235 542256 542709 8057680 8076029 100810549 100820061 101268317 100256085 100232868 107962142 107957285 102602212 127901454 107818774 107821033
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