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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5  542256  bearded-ear 1 
 zma-r.6  542256  bearded-ear 1 
 zma-m.5  542256  bearded-ear 1 
 zma-u.5  542709  MADS box protein 
 osa-u.5  4330328  MADS-box transcription factor 6-like 
 gma-u.5  100820061  agamous-like MADS-box protein MADS3 
 gma-u.5  100810549  agamous-like MADS-box protein MADS3 
 sly-u.5  AGL6  AGAMOUS-like MADS-box protein AGL6 
 vvi-u.5  MADS3  MADS-box protein 3 
 vvi-u.5  100256085  agamous-like MADS-box protein MADS3 

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Top 50 coexpressed genes to 542256 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542256 (zma-u.5 coexpression data)

CoexMap"542256"


zmaLOC542256 | Entrez gene ID : 542256
Species zma osa gma sly vvi sbi nta mtr cre bra cit hvu ppo bdi sot tae ath bna ghi
Paralog 4 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (124 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (246 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1355 genes)  IEA  
Protein NP_001105332.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001105332.1)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for NP_001105332.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

zma-u.5
for
542256

.

zma-r.6
for
542256

.

zma-m.5
for
542256

.

zma-u.5
for
542709

.

osa-u.5
for
4330328

.

gma-u.5
for
100820061

.

gma-u.5
for
100810549

.

sly-u.5
for
AGL6

.

vvi-u.5
for
MADS3

.

vvi-u.5
for
100256085

.


Ortholog ID: 4707
Species gma gma sly osa zma zma vvi vvi tae tae ghi ghi sbi sbi sot cit bdi nta nta
Symbol LOC100810549 LOC100820061 AGL6 LOC4330328 LOC542256 LOC542709 LOC100256085 MADS3 LOC542777 LOC123145106 LOC107962142 LOC107957285 LOC8057680 LOC8076029 LOC102602212 LOC127901454 AGL6 LOC107818774 LOC107821033
Function* agamous-like MADS-box protein MADS3 agamous-like MADS-box protein MADS3 AGAMOUS-like MADS-box protein AGL6 MADS-box transcription factor 6-like bearded-ear 1 MADS box protein agamous-like MADS-box protein MADS3 MADS-box protein 3 MADS-box transcription factor 6 MADS-box transcription factor 6 MADS-box transcription factor 6 agamous-like MADS-box protein AGL6 MADS-box transcription factor 17 MADS-box transcription factor 6 MADS-box transcription factor 6 agamous-like MADS-box protein MADS3 MADS-box transcription factor 6 protein AGAMOUS-LIKE 6 protein AGAMOUS-LIKE 6-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100810549 100820061 101268317 4330328 542256 542709 100256085 100232868 542777 123145106 107962142 107957285 8057680 8076029 102602212 127901454 100822235 107818774 107821033
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