ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8064155	probable NOT transcription complex subunit VIP2
sbi-r.1	8081948	probable NOT transcription complex subunit VIP2
zma-u.5	100281429	uncharacterized LOC100281429
zma-u.5	100381661	uncharacterized LOC100381661
osa-u.5	4334027	probable NOT transcription complex subunit VIP2
osa-u.5	4330931	probable NOT transcription complex subunit VIP2
osa-u.5	4339144	probable NOT transcription complex subunit VIP2
tae-r.2	123182392	probable NOT transcription complex subunit VIP2
tae-r.2	123060299	probable NOT transcription complex subunit VIP2
tae-r.2	123104366	probable NOT transcription complex subunit VIP2
hvu-r.1	123444454	probable NOT transcription complex subunit VIP2
hvu-r.1	123406341	probable NOT transcription complex subunit VIP2
bdi-r.1	100843655	probable NOT transcription complex subunit VIP2
bdi-r.1	100844143	probable NOT transcription complex subunit VIP2
ath-u.5	VIP2	VIRE2 interacting protein 2
ath-u.5	AT1G07705	NOT2 / NOT3 / NOT5 family
gma-u.5	100807026	probable NOT transcription complex subunit VIP2
gma-u.5	100806559	probable NOT transcription complex subunit VIP2
gma-u.5	100783662	probable NOT transcription complex subunit VIP2
sly-u.5	101258724	probable NOT transcription complex subunit VIP2
sly-u.5	101256781	probable NOT transcription complex subunit VIP2
bra-r.6	103851558	probable NOT transcription complex subunit VIP2
bra-r.6	103856612	probable NOT transcription complex subunit VIP2
bra-r.6	103871522	probable NOT transcription complex subunit VIP2
vvi-u.5	109123481	probable NOT transcription complex subunit VIP2
vvi-u.5	100263354	probable NOT transcription complex subunit VIP2
vvi-u.5	100248449	probable NOT transcription complex subunit VIP2
ppo-u.5	18095311	probable NOT transcription complex subunit VIP2
ppo-u.5	18107269	probable NOT transcription complex subunit VIP2
mtr-u.5	11418070	probable NOT transcription complex subunit VIP2
mtr-u.5	25492462	probable NOT transcription complex subunit VIP2
ghi-r.1	121212693	probable NOT transcription complex subunit VIP2
ghi-r.1	107959074	probable NOT transcription complex subunit VIP2
ghi-r.1	107938436	probable NOT transcription complex subunit VIP2
bna-r.1	106415647	probable NOT transcription complex subunit VIP2
bna-r.1	106436229	probable NOT transcription complex subunit VIP2
bna-r.1	106441122	probable NOT transcription complex subunit VIP2
sot-r.1	102585273	probable NOT transcription complex subunit VIP2
sot-r.1	102579065	probable NOT transcription complex subunit VIP2
cit-r.1	102577999	probable NOT transcription complex subunit VIP2
nta-r.1	107813402	putative NOT transcription complex subunit VIP2
nta-r.1	107771307	putative NOT transcription complex subunit VIP2
nta-r.1	107820585	putative NOT transcription complex subunit VIP2
cre-r.1	CHLRE_06g309050v5	uncharacterized protein

Top 50 coexpressed genes to 8064155 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8064155 (sbi-r.1 coexpression data)

CoexMap"8064155"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi03018 [list] [network] RNA degradation (112 genes)

GO BP

GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening	(5 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1596 genes)	IEA

GO CC

GO:0030015 [list] [network] CCR4-NOT core complex	(22 genes)	IEA
GO:0000932 [list] [network] P-body	(47 genes)	IEA

GO MF

Protein

XP_002439980.1 [sequence] [blastp]
XP_021303495.1 [sequence] [blastp]
XP_021303496.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, nucl 3, vacu 1, cyto_nucl 1, cysk_nucl 1, nucl_plas 1	(predict for XP_002439980.1)
chlo 4, nucl 3, vacu 1, pero 1, cyto_nucl 1, cysk_nucl 1, nucl_plas 1	(predict for XP_021303495.1)
chlo 4, nucl 3, pero 2, vacu 1, cyto_nucl 1, cysk_nucl 1, nucl_plas 1	(predict for XP_021303496.1)

Subcellular
localization
TargetP

chlo 8	(predict for XP_002439980.1)
chlo 8	(predict for XP_021303495.1)
chlo 8	(predict for XP_021303496.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8064155	sbi-r.1 for 8081948	zma-u.5 for 100281429	zma-u.5 for 100381661	osa-u.5 for 4334027	osa-u.5 for 4330931	osa-u.5 for 4339144	tae-r.2 for 123182392	tae-r.2 for 123060299	tae-r.2 for 123104366	hvu-r.1 for 123444454	hvu-r.1 for 123406341	bdi-r.1 for 100843655	bdi-r.1 for 100844143	ath-u.5 for VIP2	ath-u.5 for AT1G07705	gma-u.5 for 100807026	gma-u.5 for 100806559	gma-u.5 for 100783662	sly-u.5 for 101258724	sly-u.5 for 101256781	bra-r.6 for 103851558	bra-r.6 for 103856612	bra-r.6 for 103871522	vvi-u.5 for 109123481	vvi-u.5 for 100263354	vvi-u.5 for 100248449	ppo-u.5 for 18095311	ppo-u.5 for 18107269	mtr-u.5 for 11418070	mtr-u.5 for 25492462	ghi-r.1 for 121212693	ghi-r.1 for 107959074	ghi-r.1 for 107938436	bna-r.1 for 106415647	bna-r.1 for 106436229	bna-r.1 for 106441122	sot-r.1 for 102585273	sot-r.1 for 102579065	cit-r.1 for 102577999	nta-r.1 for 107813402	nta-r.1 for 107771307	nta-r.1 for 107820585	cre-r.1 for CHLRE_06g309050v5

Ortholog

Ortholog ID: 2513

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

VIP2

Function^*

probable NOT transcription complex subunit VIP2

uncharacterized LOC100281429

uncharacterized LOC100381661

probable NOT transcription complex subunit VIP2

VIRE2 interacting protein 2

NOT2 / NOT3 / NOT5 family

probable NOT transcription complex subunit VIP2

putative NOT transcription complex subunit VIP2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma00970	Aminoacyl-tRNA biosynthesis	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	5
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	3
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03030	DNA replication	3
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03410	Base excision repair	2
hvu03420	Nucleotide excision repair	2
hvu03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	5
ath03040	Spliceosome	3
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma04120	Ubiquitin mediated proteolysis	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3
bra00020	Citrate cycle (TCA cycle)	2
bra01200	Carbon metabolism	2
bra00541	Biosynthesis of various nucleotide sugars	2
bra01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5
ppo00510	N-Glycan biosynthesis	4
ppo00513	Various types of N-glycan biosynthesis	4
ppo00020	Citrate cycle (TCA cycle)	3
ppo01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3
mtr03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	4
cre03018	RNA degradation	3

Expression

Expression pattern

Entrez Gene ID^*

8064155

8081948

100281429

100381661

4334027

4330931

4339144

123182392

123140151

123137281

123406341

123399853

100843655

100844143

836092

837284

100807026

100806559

100783662

101258724

101256781

103851558

103856612

103871522

109123481

100263354

100248449

18095311

18107269

11418070

25492462

121212693

107959074

107931419

106415647

106436229

106385420

102585273

102579065

102577999

107813402

107820585

107824757

5716830

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	2	3	3	2	2	2	3	2	3	3	2	2	3	3	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8064155 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8064155 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**