ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107938436	probable NOT transcription complex subunit VIP2
ghi-r.1	107932511	probable NOT transcription complex subunit VIP2
ghi-r.1	121212693	probable NOT transcription complex subunit VIP2
ghi-r.1	107959074	probable NOT transcription complex subunit VIP2
ath-u.5	VIP2	VIRE2 interacting protein 2
ath-u.5	AT1G07705	NOT2 / NOT3 / NOT5 family
bra-r.6	103856612	probable NOT transcription complex subunit VIP2
bra-r.6	103871522	probable NOT transcription complex subunit VIP2
bra-r.6	103851558	probable NOT transcription complex subunit VIP2
bna-r.1	106346388	probable NOT transcription complex subunit VIP2
bna-r.1	106386841	probable NOT transcription complex subunit VIP2
bna-r.1	106441122	probable NOT transcription complex subunit VIP2
cit-r.1	102577999	probable NOT transcription complex subunit VIP2
gma-u.5	100807026	probable NOT transcription complex subunit VIP2
gma-u.5	100806559	probable NOT transcription complex subunit VIP2
gma-u.5	100783662	probable NOT transcription complex subunit VIP2
vvi-u.5	100263354	probable NOT transcription complex subunit VIP2
vvi-u.5	100248449	probable NOT transcription complex subunit VIP2
vvi-u.5	109123481	probable NOT transcription complex subunit VIP2
ppo-u.5	18107269	probable NOT transcription complex subunit VIP2
ppo-u.5	18095311	probable NOT transcription complex subunit VIP2
mtr-u.5	11418070	probable NOT transcription complex subunit VIP2
mtr-u.5	25492462	probable NOT transcription complex subunit VIP2
sly-u.5	101258724	probable NOT transcription complex subunit VIP2
sly-u.5	101256781	probable NOT transcription complex subunit VIP2
sot-r.1	102585273	probable NOT transcription complex subunit VIP2
sot-r.1	102579065	probable NOT transcription complex subunit VIP2
nta-r.1	107771307	putative NOT transcription complex subunit VIP2
nta-r.1	107820585	putative NOT transcription complex subunit VIP2
nta-r.1	107813402	putative NOT transcription complex subunit VIP2
osa-u.5	4339144	probable NOT transcription complex subunit VIP2
osa-u.5	4334027	probable NOT transcription complex subunit VIP2
osa-u.5	4330931	probable NOT transcription complex subunit VIP2
zma-u.5	100381661	uncharacterized LOC100381661
zma-u.5	100281429	uncharacterized LOC100281429
tae-r.2	123112651	probable NOT transcription complex subunit VIP2
tae-r.2	123137281	probable NOT transcription complex subunit VIP2
tae-r.2	123129240	probable NOT transcription complex subunit VIP2
hvu-r.1	123444454	probable NOT transcription complex subunit VIP2
hvu-r.1	123399853	probable NOT transcription complex subunit VIP2
sbi-r.1	8064155	probable NOT transcription complex subunit VIP2
sbi-r.1	8081948	probable NOT transcription complex subunit VIP2
bdi-r.1	100844143	probable NOT transcription complex subunit VIP2
bdi-r.1	100843655	probable NOT transcription complex subunit VIP2
cre-r.1	CHLRE_06g309050v5	uncharacterized protein

Top 50 coexpressed genes to 107938436 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107938436 (ghi-r.1 coexpression data)

CoexMap"107938436"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03018 [list] [network] RNA degradation (286 genes)

GO BP

GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening	(15 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(4318 genes)	IEA

GO CC

GO:0030015 [list] [network] CCR4-NOT core complex	(56 genes)	IEA
GO:0000932 [list] [network] P-body	(130 genes)	IEA

GO MF

Protein

XP_016727092.1 [sequence] [blastp]
XP_016727093.1 [sequence] [blastp]
XP_016727094.1 [sequence] [blastp]
XP_040931412.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1	(predict for XP_016727092.1)
nucl 9, chlo 1	(predict for XP_016727093.1)
nucl 9, chlo 1	(predict for XP_016727094.1)
nucl 9, chlo 1	(predict for XP_040931412.1)

Subcellular
localization
TargetP

chlo 8	(predict for XP_016727092.1)
chlo 8	(predict for XP_016727093.1)
chlo 8	(predict for XP_016727094.1)
chlo 8	(predict for XP_040931412.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107938436	ghi-r.1 for 107932511	ghi-r.1 for 121212693	ghi-r.1 for 107959074	ath-u.5 for VIP2	ath-u.5 for AT1G07705	bra-r.6 for 103856612	bra-r.6 for 103871522	bra-r.6 for 103851558	bna-r.1 for 106346388	bna-r.1 for 106386841	bna-r.1 for 106441122	cit-r.1 for 102577999	gma-u.5 for 100807026	gma-u.5 for 100806559	gma-u.5 for 100783662	vvi-u.5 for 100263354	vvi-u.5 for 100248449	vvi-u.5 for 109123481	ppo-u.5 for 18107269	ppo-u.5 for 18095311	mtr-u.5 for 11418070	mtr-u.5 for 25492462	sly-u.5 for 101258724	sly-u.5 for 101256781	sot-r.1 for 102585273	sot-r.1 for 102579065	nta-r.1 for 107771307	nta-r.1 for 107820585	nta-r.1 for 107813402	osa-u.5 for 4339144	osa-u.5 for 4334027	osa-u.5 for 4330931	zma-u.5 for 100381661	zma-u.5 for 100281429	tae-r.2 for 123112651	tae-r.2 for 123137281	tae-r.2 for 123129240	hvu-r.1 for 123444454	hvu-r.1 for 123399853	sbi-r.1 for 8064155	sbi-r.1 for 8081948	bdi-r.1 for 100844143	bdi-r.1 for 100843655	cre-r.1 for CHLRE_06g309050v5

Ortholog

Ortholog ID: 2513

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

VIP2

Function^*

probable NOT transcription complex subunit VIP2

VIRE2 interacting protein 2

NOT2 / NOT3 / NOT5 family

probable NOT transcription complex subunit VIP2

putative NOT transcription complex subunit VIP2

probable NOT transcription complex subunit VIP2

uncharacterized LOC100381661

uncharacterized LOC100281429

probable NOT transcription complex subunit VIP2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	5
ath03040	Spliceosome	3
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3
bra00020	Citrate cycle (TCA cycle)	2
bra01200	Carbon metabolism	2
bra00541	Biosynthesis of various nucleotide sugars	2
bra01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma04120	Ubiquitin mediated proteolysis	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5
ppo00510	N-Glycan biosynthesis	4
ppo00513	Various types of N-glycan biosynthesis	4
ppo00020	Citrate cycle (TCA cycle)	3
ppo01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3
mtr03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	3
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	5
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma00970	Aminoacyl-tRNA biosynthesis	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03030	DNA replication	3
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03410	Base excision repair	2
hvu03420	Nucleotide excision repair	2
hvu03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	4
cre03018	RNA degradation	3

Expression

Expression pattern

Entrez Gene ID^*

121212693

107959074

107931419

836092

837284

103856612

103871522

103851558

106436229

106415647

106385420

102577999

100807026

100806559

100783662

100263354

100248449

109123481

18107269

18095311

11418070

25492462

101258724

101256781

102585273

102579065

107820585

107813402

107824757

4339144

4334027

4330931

100381661

100281429

123137281

123140151

123182392

123399853

123406341

8064155

8081948

100844143

100843655

5716830

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	1	3	3	2	2	2	2	3	3	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107938436 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107938436 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**