ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8072008	transport inhibitor response 1-like protein Os04g0395600
sbi-r.1	8083114	transport inhibitor response 1-like protein Os11g0515500
zma-u.5	100278846	Protein AUXIN SIGNALING F-BOX 3
zma-u.5	100281739	transport inhibitor response 1 protein
zma-u.5	100216731	Protein AUXIN SIGNALING F-BOX 3
osa-u.5	4335696	transport inhibitor response 1-like protein Os04g0395600
osa-u.5	4350590	transport inhibitor response 1-like protein Os11g0515500
tae-r.2	123189076	transport inhibitor response 1-like protein Os04g0395600
tae-r.2	123122036	transport inhibitor response 1-like protein Os11g0515500
tae-r.2	123112534	transport inhibitor response 1-like protein Os11g0515500
hvu-r.1	123399694	transport inhibitor response 1-like protein Os11g0515500
hvu-r.1	123426568	transport inhibitor response 1-like protein Os04g0395600
bdi-r.1	100822494	transport inhibitor response 1-like protein Os04g0395600
bdi-r.1	100839342	transport inhibitor response 1-like protein Os11g0515500
ath-u.5	AFB2	auxin signaling F-box 2
ath-u.5	AFB3	auxin signaling F-box 3
gma-u.5	AFB3A	auxin signaling F-box 3 protein
gma-u.5	100802672	protein AUXIN SIGNALING F-BOX 2
gma-u.5	AFB3B	auxin signaling F-box 3 protein
bra-r.6	103843104	protein AUXIN SIGNALING F-BOX 3
bra-r.6	103836140	protein AUXIN SIGNALING F-BOX 3
bra-r.6	103854290	protein AUXIN SIGNALING F-BOX 2
vvi-u.5	100263524	protein AUXIN SIGNALING F-BOX 2
ppo-u.5	7495822	protein AUXIN SIGNALING F-BOX 2
ppo-u.5	18107123	protein AUXIN SIGNALING F-BOX 2
mtr-u.5	11429111	protein AUXIN SIGNALING F-BOX 2
ghi-r.1	107923921	protein AUXIN SIGNALING F-BOX 2
ghi-r.1	107937113	protein AUXIN SIGNALING F-BOX 2
ghi-r.1	107935837	protein AUXIN SIGNALING F-BOX 2
bna-r.1	106401406	protein AUXIN SIGNALING F-BOX 3
bna-r.1	106402220	protein AUXIN SIGNALING F-BOX 2
bna-r.1	106347727	protein AUXIN SIGNALING F-BOX 2
cit-r.1	102616638	protein AUXIN SIGNALING F-BOX 2
nta-r.1	107781894	protein AUXIN SIGNALING F-BOX 2
nta-r.1	107789933	protein AUXIN SIGNALING F-BOX 2

Top 50 coexpressed genes to 8072008 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8072008 (sbi-r.1 coexpression data)

CoexMap"8072008"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi04075 [list] [network] Plant hormone signal transduction (389 genes)

GO BP

GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

(59 genes)

IEA

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex

(52 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(4172 genes)

IEA

Protein

XP_021318622.1 [sequence] [blastp]
XP_021318623.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, cyto_nucl 4, nucl 2, chlo 2	(predict for XP_021318622.1)
cyto 5, cyto_nucl 4, nucl 2, chlo 2	(predict for XP_021318623.1)

Subcellular
localization
TargetP

other 7	(predict for XP_021318622.1)
other 7	(predict for XP_021318623.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8072008	sbi-r.1 for 8083114	zma-u.5 for 100278846	zma-u.5 for 100281739	zma-u.5 for 100216731	osa-u.5 for 4335696	osa-u.5 for 4350590	tae-r.2 for 123189076	tae-r.2 for 123122036	tae-r.2 for 123112534	hvu-r.1 for 123399694	hvu-r.1 for 123426568	bdi-r.1 for 100822494	bdi-r.1 for 100839342	ath-u.5 for AFB2	ath-u.5 for AFB3	gma-u.5 for AFB3A	gma-u.5 for 100802672	gma-u.5 for AFB3B	bra-r.6 for 103843104	bra-r.6 for 103836140	bra-r.6 for 103854290	vvi-u.5 for 100263524	ppo-u.5 for 7495822	ppo-u.5 for 18107123	mtr-u.5 for 11429111	ghi-r.1 for 107923921	ghi-r.1 for 107937113	ghi-r.1 for 107935837	bna-r.1 for 106401406	bna-r.1 for 106402220	bna-r.1 for 106347727	cit-r.1 for 102616638	nta-r.1 for 107781894	nta-r.1 for 107789933

Ortholog

Ortholog ID: 4247

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

nta

Symbol

AFB2

AFB3

AFB3A

Function^*

transport inhibitor response 1-like protein Os04g0395600

transport inhibitor response 1-like protein Os11g0515500

Protein AUXIN SIGNALING F-BOX 3

transport inhibitor response 1 protein

Protein AUXIN SIGNALING F-BOX 3

transport inhibitor response 1-like protein Os04g0395600

transport inhibitor response 1-like protein Os11g0515500

transport inhibitor response 1-like protein Os04g0395600

transport inhibitor response 1-like protein Os11g0515500

transport inhibitor response 1-like protein Os04g0395600

transport inhibitor response 1-like protein Os11g0515500

auxin signaling F-box 2

auxin signaling F-box 3

auxin signaling F-box 3 protein

protein AUXIN SIGNALING F-BOX 2

protein AUXIN SIGNALING F-BOX 3

protein AUXIN SIGNALING F-BOX 2

protein AUXIN SIGNALING F-BOX 3-like

protein AUXIN SIGNALING F-BOX 3

protein AUXIN SIGNALING F-BOX 2

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	2
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2
osa00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	4
ath04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3
cit03015	mRNA surveillance pathway	2
cit04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta01240	Biosynthesis of cofactors	3
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta01240	Biosynthesis of cofactors	3
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2
nta00270	Cysteine and methionine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

8072008

8083114

100278846

100281739

100216731

4335696

4350590

123189076

123112534

123104279

123399694

123426568

100822494

100839342

822296

837838

100812516

100802672

100788040

103843104

103836140

103854290

100263524

7495822

18107123

11429111

107937113

107935837

107911740

106405934

106412544

106382373

102616638

107781894

107789933

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	nta	sot	cre	sly
Paralog	2	3	2	3	2	2	2	3	3	1	2	1	3	3	1	2	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8072008 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8072008 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**