ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107789933	protein AUXIN SIGNALING F-BOX 2
nta-r.1	107781894	protein AUXIN SIGNALING F-BOX 2
ath-u.5	AFB2	auxin signaling F-box 2
ath-u.5	AFB3	auxin signaling F-box 3
gma-u.5	100788040	protein AUXIN SIGNALING F-BOX 2
gma-u.5	100802672	protein AUXIN SIGNALING F-BOX 2
gma-u.5	AFB3A	auxin signaling F-box 3 protein
bra-r.6	103843104	protein AUXIN SIGNALING F-BOX 3
bra-r.6	103854290	protein AUXIN SIGNALING F-BOX 2
bra-r.6	103836140	protein AUXIN SIGNALING F-BOX 3
vvi-u.5	100263524	protein AUXIN SIGNALING F-BOX 2
ppo-u.5	7495822	protein AUXIN SIGNALING F-BOX 2
ppo-u.5	18107123	protein AUXIN SIGNALING F-BOX 2
mtr-u.5	11429111	protein AUXIN SIGNALING F-BOX 2
ghi-r.1	107935837	protein AUXIN SIGNALING F-BOX 2
ghi-r.1	107937113	protein AUXIN SIGNALING F-BOX 2
ghi-r.1	107923921	protein AUXIN SIGNALING F-BOX 2
bna-r.1	106362045	protein AUXIN SIGNALING F-BOX 3
bna-r.1	106412544	protein AUXIN SIGNALING F-BOX 3
bna-r.1	106405934	protein AUXIN SIGNALING F-BOX 3-like
cit-r.1	102616638	protein AUXIN SIGNALING F-BOX 2
osa-u.5	4350590	transport inhibitor response 1-like protein Os11g0515500
osa-u.5	4335696	transport inhibitor response 1-like protein Os04g0395600
zma-u.5	100216731	Protein AUXIN SIGNALING F-BOX 3
zma-u.5	100278846	Protein AUXIN SIGNALING F-BOX 3
zma-u.5	100281739	transport inhibitor response 1 protein
tae-r.2	123045326	transport inhibitor response 1-like protein Os04g0395600
tae-r.2	123053161	transport inhibitor response 1-like protein Os04g0395600
tae-r.2	123104279	transport inhibitor response 1-like protein Os11g0515500
hvu-r.1	123426568	transport inhibitor response 1-like protein Os04g0395600
hvu-r.1	123399694	transport inhibitor response 1-like protein Os11g0515500
sbi-r.1	8083114	transport inhibitor response 1-like protein Os11g0515500
sbi-r.1	8072008	transport inhibitor response 1-like protein Os04g0395600
bdi-r.1	100839342	transport inhibitor response 1-like protein Os11g0515500
bdi-r.1	100822494	transport inhibitor response 1-like protein Os04g0395600

Top 50 coexpressed genes to 107789933 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107789933 (nta-r.1 coexpression data)

CoexMap"107789933"

[Cytoscape]

Annotation

functional annotation

KEGG

nta04075 [list] [network] Plant hormone signal transduction (826 genes)

GO BP

GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

(85 genes)

IEA

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex

(98 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(7685 genes)

IEA

Protein

XP_075098441.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cyto_nucl 4, nucl 2

(predict for XP_075098441.1)

Subcellular
localization
TargetP

other 4

(predict for XP_075098441.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107789933	nta-r.1 for 107781894	ath-u.5 for AFB2	ath-u.5 for AFB3	gma-u.5 for 100788040	gma-u.5 for 100802672	gma-u.5 for AFB3A	bra-r.6 for 103843104	bra-r.6 for 103854290	bra-r.6 for 103836140	vvi-u.5 for 100263524	ppo-u.5 for 7495822	ppo-u.5 for 18107123	mtr-u.5 for 11429111	ghi-r.1 for 107935837	ghi-r.1 for 107937113	ghi-r.1 for 107923921	bna-r.1 for 106362045	bna-r.1 for 106412544	bna-r.1 for 106405934	cit-r.1 for 102616638	osa-u.5 for 4350590	osa-u.5 for 4335696	zma-u.5 for 100216731	zma-u.5 for 100278846	zma-u.5 for 100281739	tae-r.2 for 123045326	tae-r.2 for 123053161	tae-r.2 for 123104279	hvu-r.1 for 123426568	hvu-r.1 for 123399694	sbi-r.1 for 8083114	sbi-r.1 for 8072008	bdi-r.1 for 100839342	bdi-r.1 for 100822494

Ortholog

Ortholog ID: 4247

Species

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

LOC107789933

LOC107781894

AFB2

AFB3

AFB3A

Function^*