ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106412544	protein AUXIN SIGNALING F-BOX 3
bna-r.1	106405934	protein AUXIN SIGNALING F-BOX 3-like
bna-r.1	106402220	protein AUXIN SIGNALING F-BOX 2
bna-r.1	106401406	protein AUXIN SIGNALING F-BOX 3
bra-r.6	103843104	protein AUXIN SIGNALING F-BOX 3
bra-r.6	103854290	protein AUXIN SIGNALING F-BOX 2
bra-r.6	103836140	protein AUXIN SIGNALING F-BOX 3
ath-u.5	AFB2	auxin signaling F-box 2
ath-u.5	AFB3	auxin signaling F-box 3
ghi-r.1	107937113	protein AUXIN SIGNALING F-BOX 2
ghi-r.1	107935837	protein AUXIN SIGNALING F-BOX 2
ghi-r.1	107911740	protein AUXIN SIGNALING F-BOX 2
cit-r.1	102616638	protein AUXIN SIGNALING F-BOX 2
gma-u.5	100788040	protein AUXIN SIGNALING F-BOX 2
gma-u.5	100802672	protein AUXIN SIGNALING F-BOX 2
gma-u.5	AFB3A	auxin signaling F-box 3 protein
vvi-u.5	100263524	protein AUXIN SIGNALING F-BOX 2
ppo-u.5	7495822	protein AUXIN SIGNALING F-BOX 2
ppo-u.5	18107123	protein AUXIN SIGNALING F-BOX 2
mtr-u.5	11429111	protein AUXIN SIGNALING F-BOX 2
nta-r.1	107789933	protein AUXIN SIGNALING F-BOX 2
nta-r.1	107781894	protein AUXIN SIGNALING F-BOX 2
osa-u.5	4350590	transport inhibitor response 1-like protein Os11g0515500
osa-u.5	4335696	transport inhibitor response 1-like protein Os04g0395600
zma-u.5	100216731	Protein AUXIN SIGNALING F-BOX 3
zma-u.5	100278846	Protein AUXIN SIGNALING F-BOX 3
zma-u.5	100281739	transport inhibitor response 1 protein
tae-r.2	123053161	transport inhibitor response 1-like protein Os04g0395600
tae-r.2	123104279	transport inhibitor response 1-like protein Os11g0515500
tae-r.2	123045326	transport inhibitor response 1-like protein Os04g0395600
hvu-r.1	123399694	transport inhibitor response 1-like protein Os11g0515500
hvu-r.1	123426568	transport inhibitor response 1-like protein Os04g0395600
sbi-r.1	8072008	transport inhibitor response 1-like protein Os04g0395600
sbi-r.1	8083114	transport inhibitor response 1-like protein Os11g0515500
bdi-r.1	100839342	transport inhibitor response 1-like protein Os11g0515500
bdi-r.1	100822494	transport inhibitor response 1-like protein Os04g0395600

Top 50 coexpressed genes to 106412544 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106412544 (bna-r.1 coexpression data)

CoexMap"106412544"

[Cytoscape]

Annotation

functional annotation

KEGG

bna04075 [list] [network] Plant hormone signal transduction (1464 genes)

GO BP

GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

(170 genes)

IEA

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex

(134 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(12789 genes)

IEA

Protein

XP_013708906.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 3, chlo 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_013708906.2)

Subcellular
localization
TargetP

other 8, chlo 3

(predict for XP_013708906.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106412544	bna-r.1 for 106405934	bna-r.1 for 106402220	bna-r.1 for 106401406	bra-r.6 for 103843104	bra-r.6 for 103854290	bra-r.6 for 103836140	ath-u.5 for AFB2	ath-u.5 for AFB3	ghi-r.1 for 107937113	ghi-r.1 for 107935837	ghi-r.1 for 107911740	cit-r.1 for 102616638	gma-u.5 for 100788040	gma-u.5 for 100802672	gma-u.5 for AFB3A	vvi-u.5 for 100263524	ppo-u.5 for 7495822	ppo-u.5 for 18107123	mtr-u.5 for 11429111	nta-r.1 for 107789933	nta-r.1 for 107781894	osa-u.5 for 4350590	osa-u.5 for 4335696	zma-u.5 for 100216731	zma-u.5 for 100278846	zma-u.5 for 100281739	tae-r.2 for 123053161	tae-r.2 for 123104279	tae-r.2 for 123045326	hvu-r.1 for 123399694	hvu-r.1 for 123426568	sbi-r.1 for 8072008	sbi-r.1 for 8083114	bdi-r.1 for 100839342	bdi-r.1 for 100822494

Ortholog

Ortholog ID: 4247

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

AFB2

AFB3

AFB3A

Function^*

protein AUXIN SIGNALING F-BOX 3

protein AUXIN SIGNALING F-BOX 3-like

protein AUXIN SIGNALING F-BOX 3

protein AUXIN SIGNALING F-BOX 2

protein AUXIN SIGNALING F-BOX 3

auxin signaling F-box 2

auxin signaling F-box 3

protein AUXIN SIGNALING F-BOX 2

auxin signaling F-box 3 protein

protein AUXIN SIGNALING F-BOX 2

transport inhibitor response 1-like protein Os11g0515500

transport inhibitor response 1-like protein Os04g0395600

Protein AUXIN SIGNALING F-BOX 3

transport inhibitor response 1 protein

transport inhibitor response 1-like protein Os11g0515500

transport inhibitor response 1-like protein Os04g0395600

transport inhibitor response 1-like protein Os11g0515500

transport inhibitor response 1-like protein Os04g0395600

transport inhibitor response 1-like protein Os11g0515500

transport inhibitor response 1-like protein Os04g0395600

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	4
ath04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3
cit03015	mRNA surveillance pathway	2
cit04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta01240	Biosynthesis of cofactors	3
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta01240	Biosynthesis of cofactors	3
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2
osa00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	2
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

106412544

106405934

106382373

103843104

103854290

103836140

822296

837838

107937113

107935837

107911740

102616638

100788040

100802672

100812516

100263524

7495822

18107123

11429111

107789933

107781894

4350590

4335696

100216731

100278846

100281739

123104279

123112534

123189076

123399694

123426568

8072008

8083114

100839342

100822494

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	nta	osa	zma	tae	hvu	sbi	bdi	sot	cre	sly
Paralog	4	3	2	3	1	3	1	2	1	2	2	3	3	2	2	2	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106412544 (bna-r.1 coexpression data)

Top 50 enrichment test to 106412544 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**