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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8072437   U1 snRNP-associated protein usp106 
 sbi-r.1   110436772   putative RNA-binding protein Luc7-like 1 
 zma-u.5   100191822   uncharacterized LOC100191822 
 zma-u.5   100273852   LUC7 related protein 
 zma-u.5   100282822   uncharacterized LOC100282822 
 osa-u.5   4329919   uncharacterized LOC4329919 
 osa-u.5   4334750   uncharacterized LOC4334750 
 tae-r.2   123144763   putative RNA-binding protein Luc7-like 2 
 tae-r.2   123137416   putative RNA-binding protein Luc7-like 2 
 tae-r.2   123127660   protein LUC7 
 hvu-r.1   123401349   putative RNA-binding protein Luc7-like 1 
 hvu-r.1   123395044   U1 snRNP-associated protein usp106-like 
 bdi-r.1   100842882   putative RNA-binding protein Luc7-like 2 
 bdi-r.1   100826418   putative RNA-binding protein Luc7-like 2 
 ath-u.5   UNE6   LUC7 related protein 
 ath-u.5   AT5G17440   LUC7 related protein 
 gma-u.5   100793888   putative RNA-binding protein Luc7-like 2-like 
 gma-u.5   100777711   putative RNA-binding protein Luc7-like 2 
 sly-u.5   101247022   uncharacterized LOC101247022 
 bra-r.6   103833174   putative RNA-binding protein Luc7-like 2 
 bra-r.6   103851108   U1 snRNP-associated protein usp106 
 vvi-u.5   100254714   uncharacterized LOC100254714 
 ppo-u.5   18104226   uncharacterized LOC18104226 
 ppo-u.5   7459230   uncharacterized LOC7459230 
 mtr-u.5   11426052   luc7-like protein 
 ghi-r.1   107952120   putative RNA-binding protein Luc7-like 2 
 ghi-r.1   107949509   putative RNA-binding protein Luc7-like 1 
 bna-r.1   106355978   putative RNA-binding protein Luc7-like 2 
 bna-r.1   106387725   putative RNA-binding protein Luc7-like 2 
 bna-r.1   106387727   putative RNA-binding protein Luc7-like 2 
 sot-r.1   102579947   U1 snRNP-associated protein usp106-like 
 cit-r.1   102608140   uncharacterized LOC102608140 
 nta-r.1   107761079   U1 snRNP-associated protein usp106-like 
 nta-r.1   107832818   uncharacterized LOC107832818 
 nta-r.1   107765649   U1 snRNP-associated protein usp106-like 

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Top 50 coexpressed genes to 8072437 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8072437 (sbi-r.1 coexpression data)

CoexMap"8072437"


sbiLOC8072437 | Entrez gene ID : 8072437      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 2 3 2 2 2 2 1 2 1 2 1 2 3 1 1 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006376 [list] [network] mRNA splice site recognition  (9 genes)  IEA  
GO CC
GO:0071004 [list] [network] U2-type prespliceosome  (20 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (25 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
Protein XP_002454145.1 [sequence] [blastp]
XP_021315550.1 [sequence] [blastp]
XP_021315551.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for XP_002454145.1)
cyto 4,  nucl_plas 2,  cyto_pero 2,  nucl 2,  cyto_E.R. 2  (predict for XP_021315550.1)
cyto 4,  nucl_plas 2,  cyto_pero 2,  nucl 2,  cyto_E.R. 2  (predict for XP_021315551.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002454145.1)
other 8  (predict for XP_021315550.1)
other 8  (predict for XP_021315551.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8072437
sbi-r.1
for
110436772
zma-u.5
for
100191822
zma-u.5
for
100273852
zma-u.5
for
100282822
osa-u.5
for
4329919
osa-u.5
for
4334750
tae-r.2
for
123144763
tae-r.2
for
123137416
tae-r.2
for
123127660
hvu-r.1
for
123401349
hvu-r.1
for
123395044
bdi-r.1
for
100842882
bdi-r.1
for
100826418
ath-u.5
for
UNE6
ath-u.5
for
AT5G17440
gma-u.5
for
100793888
gma-u.5
for
100777711
sly-u.5
for
101247022
bra-r.6
for
103833174
bra-r.6
for
103851108
vvi-u.5
for
100254714
ppo-u.5
for
18104226
ppo-u.5
for
7459230
mtr-u.5
for
11426052
ghi-r.1
for
107952120
ghi-r.1
for
107949509
bna-r.1
for
106355978
bna-r.1
for
106387725
bna-r.1
for
106387727
sot-r.1
for
102579947
cit-r.1
for
102608140
nta-r.1
for
107761079
nta-r.1
for
107832818
nta-r.1
for
107765649


Ortholog ID: 4914
Species sbi sbi zma zma zma osa osa tae tae tae hvu hvu bdi bdi ath ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna bna sot cit nta nta nta
Symbol LOC8072437 LOC110436772 LOC100191822 LOC100273852 LOC100282822 LOC4329919 LOC4334750 LOC123144763 LOC123114268 LOC123087670 LOC123401349 LOC123395044 LOC100842882 LOC100826418 UNE6 AT5G17440 LOC100793888 LOC100777711 LOC101247022 LOC103833174 LOC103851108 LOC100254714 LOC18104226 LOC7459230 LOC11426052 LOC107952120 LOC107949509 LOC106355978 LOC106387725 LOC106407173 LOC102579947 LOC102608140 LOC107761079 LOC107765649 LOC107765276
Function* U1 snRNP-associated protein usp106 putative RNA-binding protein Luc7-like 1 uncharacterized LOC100191822 LUC7 related protein uncharacterized LOC100282822 uncharacterized LOC4329919 uncharacterized LOC4334750 putative RNA-binding protein Luc7-like 2 putative RNA-binding protein Luc7-like 2 putative RNA-binding protein Luc7-like 2 putative RNA-binding protein Luc7-like 1 U1 snRNP-associated protein usp106-like putative RNA-binding protein Luc7-like 2 putative RNA-binding protein Luc7-like 2 LUC7 related protein LUC7 related protein putative RNA-binding protein Luc7-like 2-like putative RNA-binding protein Luc7-like 2 uncharacterized LOC101247022 putative RNA-binding protein Luc7-like 2 U1 snRNP-associated protein usp106 uncharacterized LOC100254714 uncharacterized LOC18104226 uncharacterized LOC7459230 luc7-like protein putative RNA-binding protein Luc7-like 2 putative RNA-binding protein Luc7-like 1 putative RNA-binding protein Luc7-like 2 putative RNA-binding protein Luc7-like 2 U1 snRNP-associated protein usp106-like U1 snRNP-associated protein usp106-like uncharacterized LOC102608140 U1 snRNP-associated protein usp106-like U1 snRNP-associated protein usp106-like uncharacterized LOC107765276
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma04120 Ubiquitin mediated proteolysis 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03082 ATP-dependent chromatin remodeling 3
gma04141 Protein processing in endoplasmic reticulum 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03013 Nucleocytoplasmic transport 2
gma04141 Protein processing in endoplasmic reticulum 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 6
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi03040 Spliceosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi03040 Spliceosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 3
bna03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8072437 110436772 100191822 100273852 100282822 4329919 4334750 123144763 123114268 123087670 123401349 123395044 100842882 100826418 821276 831610 100793888 100777711 101247022 103833174 103851108 100254714 18104226 7459230 11426052 107952120 107949509 106355978 106387725 106407173 102579947 102608140 107761079 107765649 107765276
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