ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4329919	uncharacterized LOC4329919
osa-r.6	4329919	uncharacterized LOC4329919
osa-m.8	4329919	uncharacterized LOC4329919
osa-e.1	4329919	uncharacterized LOC4329919
osa-u.5	4334750	uncharacterized LOC4334750
tae-r.2	123144763	putative RNA-binding protein Luc7-like 2
tae-r.2	123137416	putative RNA-binding protein Luc7-like 2
tae-r.2	123114268	putative RNA-binding protein Luc7-like 2
hvu-r.1	123395044	U1 snRNP-associated protein usp106-like
hvu-r.1	123401349	putative RNA-binding protein Luc7-like 1
bdi-r.1	100842882	putative RNA-binding protein Luc7-like 2
bdi-r.1	100826418	putative RNA-binding protein Luc7-like 2
zma-u.5	100191822	uncharacterized LOC100191822
zma-u.5	100282822	uncharacterized LOC100282822
zma-u.5	100273852	LUC7 related protein
sbi-r.1	110436772	putative RNA-binding protein Luc7-like 1
sbi-r.1	8072437	U1 snRNP-associated protein usp106
ath-u.5	UNE6	LUC7 related protein
ath-u.5	AT5G17440	LUC7 related protein
gma-u.5	100793888	putative RNA-binding protein Luc7-like 2-like
gma-u.5	100777711	putative RNA-binding protein Luc7-like 2
sly-u.5	101247022	uncharacterized LOC101247022
bra-r.6	103833174	putative RNA-binding protein Luc7-like 2
bra-r.6	103851108	U1 snRNP-associated protein usp106
vvi-u.5	100254714	uncharacterized LOC100254714
ppo-u.5	18104226	uncharacterized LOC18104226
ppo-u.5	7459230	uncharacterized LOC7459230
mtr-u.5	11426052	luc7-like protein
ghi-r.1	107949509	putative RNA-binding protein Luc7-like 1
ghi-r.1	107952120	putative RNA-binding protein Luc7-like 2
bna-r.1	106355978	putative RNA-binding protein Luc7-like 2
bna-r.1	106387727	putative RNA-binding protein Luc7-like 2
bna-r.1	106387725	putative RNA-binding protein Luc7-like 2
sot-r.1	102579947	U1 snRNP-associated protein usp106-like
cit-r.1	102608140	uncharacterized LOC102608140
nta-r.1	107761079	U1 snRNP-associated protein usp106-like
nta-r.1	107765276	uncharacterized LOC107765276
nta-r.1	107765649	U1 snRNP-associated protein usp106-like

Top 50 coexpressed genes to 4329919 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4329919 (osa-u.5 coexpression data)

CoexMap"4329919"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006376 [list] [network] mRNA splice site recognition

(8 genes)

IEA

GO CC

GO:0071004 [list] [network] U2-type prespliceosome	(18 genes)	IEA
GO:0005685 [list] [network] U1 snRNP	(22 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(333 genes)

IEA

Protein

XP_015626137.1 [sequence] [blastp]
XP_025878467.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, chlo 1, pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_015626137.1)
cyto 4, nucl_plas 3, nucl 2, plas 2, cyto_pero 2, cyto_E.R. 2	(predict for XP_025878467.1)

Subcellular
localization
TargetP

other 8	(predict for XP_015626137.1)
other 8	(predict for XP_025878467.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4329919	osa-r.6 for 4329919	osa-m.8 for 4329919	osa-e.1 for 4329919	osa-u.5 for 4334750	tae-r.2 for 123144763	tae-r.2 for 123137416	tae-r.2 for 123114268	hvu-r.1 for 123395044	hvu-r.1 for 123401349	bdi-r.1 for 100842882	bdi-r.1 for 100826418	zma-u.5 for 100191822	zma-u.5 for 100282822	zma-u.5 for 100273852	sbi-r.1 for 110436772	sbi-r.1 for 8072437	ath-u.5 for UNE6	ath-u.5 for AT5G17440	gma-u.5 for 100793888	gma-u.5 for 100777711	sly-u.5 for 101247022	bra-r.6 for 103833174	bra-r.6 for 103851108	vvi-u.5 for 100254714	ppo-u.5 for 18104226	ppo-u.5 for 7459230	mtr-u.5 for 11426052	ghi-r.1 for 107949509	ghi-r.1 for 107952120	bna-r.1 for 106355978	bna-r.1 for 106387727	bna-r.1 for 106387725	sot-r.1 for 102579947	cit-r.1 for 102608140	nta-r.1 for 107761079	nta-r.1 for 107765276	nta-r.1 for 107765649

Ortholog

Ortholog ID: 4914

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

UNE6

Function^*

uncharacterized LOC4329919

uncharacterized LOC4334750

putative RNA-binding protein Luc7-like 2

U1 snRNP-associated protein usp106-like

putative RNA-binding protein Luc7-like 1

putative RNA-binding protein Luc7-like 2

uncharacterized LOC100191822

uncharacterized LOC100282822

LUC7 related protein

putative RNA-binding protein Luc7-like 1

U1 snRNP-associated protein usp106

LUC7 related protein

putative RNA-binding protein Luc7-like 2-like

putative RNA-binding protein Luc7-like 2

uncharacterized LOC101247022

putative RNA-binding protein Luc7-like 2

U1 snRNP-associated protein usp106

uncharacterized LOC100254714

uncharacterized LOC18104226

uncharacterized LOC7459230

luc7-like protein

putative RNA-binding protein Luc7-like 1

putative RNA-binding protein Luc7-like 2

U1 snRNP-associated protein usp106-like

uncharacterized LOC102608140

U1 snRNP-associated protein usp106-like

uncharacterized LOC107765276

U1 snRNP-associated protein usp106-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	6
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	5
hvu03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma04120	Ubiquitin mediated proteolysis	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	9
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03082	ATP-dependent chromatin remodeling	3
gma04141	Protein processing in endoplasmic reticulum	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma03013	Nucleocytoplasmic transport	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	6
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	6
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi03040	Spliceosome	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi03040	Spliceosome	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03013	Nucleocytoplasmic transport	3
bna03015	mRNA surveillance pathway	3

Expression

Expression pattern

Entrez Gene ID^*

4329919

4334750

123144763

123114268

123087670

123395044

123401349

100842882

100826418

100191822

100282822

100273852

110436772

8072437

821276

831610

100793888

100777711

101247022

103833174

103851108

100254714

18104226

7459230

11426052

107949509

107952120

106355978

106387725

106407173

102579947

102608140

107761079

107765276

107765649

The preparation time of this page was 0.1 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	2	2	3	2	2	2	1	2	1	2	1	2	3	1	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4329919 (osa-u.5 coexpression data)

Top 50 enrichment test to 4329919 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**