ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8072478	glutaredoxin-C4, chloroplastic
sbi-r.1	8058458	glutaredoxin-C8
sbi-r.1	8075160	monothiol glutaredoxin-S6
zma-u.5	100282495	Grx_C4 - glutaredoxin subgroup I
zma-u.5	100283339	glutaredoxin homolog 1
osa-u.5	4341733	glutaredoxin-C8-like
osa-u.5	4330145	monothiol glutaredoxin-S6-like
tae-r.2	123157506	glutaredoxin-C8
tae-r.2	542961	glutaredoxin-C6
tae-r.2	100192162	glutaredoxin-C6
hvu-r.1	123427207	glutaredoxin-C6-like
hvu-r.1	123403711	monothiol glutaredoxin-S6-like
bdi-r.1	100835637	monothiol glutaredoxin-S6
bdi-r.1	100825578	glutaredoxin-C8
bdi-r.1	100832099	glutaredoxin-C6
ath-u.5	AT5G20500	Glutaredoxin family protein
ath-u.5	GRXC2	Glutaredoxin family protein
ath-u.5	GRXC1	Thioredoxin superfamily protein
gma-u.5	100305517	uncharacterized LOC100305517
gma-u.5	100527634	uncharacterized LOC100527634
gma-u.5	100305955	glutaredoxin family protein
sly-u.5	101247085	glutaredoxin-C3
sly-u.5	101254986	glutaredoxin
sly-u.5	544298	glutaredoxin
bra-r.6	103873728	glutaredoxin-C1
bra-r.6	103864232	glutaredoxin
bra-r.6	103863982	glutaredoxin-C2
vvi-u.5	100244121	glutaredoxin
vvi-u.5	100241967	glutaredoxin-C3
vvi-u.5	100260385	glutaredoxin
ppo-u.5	7457752	glutaredoxin-C1
ppo-u.5	7484039	glutaredoxin-C4
ppo-u.5	7495519	glutaredoxin-C3
mtr-u.5	11438922	glutaredoxin
mtr-u.5	11438755	glutaredoxin-C4
mtr-u.5	11430185	glutaredoxin
ghi-r.1	107892273	glutaredoxin
ghi-r.1	107939805	glutaredoxin
ghi-r.1	107888669	glutaredoxin
bna-r.1	106450550	glutaredoxin
bna-r.1	106446144	glutaredoxin-C2
bna-r.1	106425765	glutaredoxin-C4
sot-r.1	102600419	glutaredoxin-C3-like
sot-r.1	102597992	glutaredoxin
sot-r.1	102591615	glutaredoxin-C4
cit-r.1	102630010	glutaredoxin-like
cit-r.1	102625900	glutaredoxin-C4
cit-r.1	102626795	glutaredoxin
nta-r.1	107801695	glutaredoxin
nta-r.1	107804854	glutaredoxin
nta-r.1	107814238	glutaredoxin
cre-r.1	CHLRE_12g513750v5	uncharacterized protein
cre-r.1	CHLRE_12g550400v5	uncharacterized protein

Top 50 coexpressed genes to 8072478 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8072478 (sbi-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

glutaredoxin-C4, chloroplastic

KEGG

GO BP

GO:0034599 [list] [network] cellular response to oxidative stress

(40 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(4816 genes)

IEA

GO MF

GO:0015038 [list] [network] glutathione disulfide oxidoreductase activity

(11 genes)

IEA

Protein

XP_002452461.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 3, extr 2, cyto_nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2

(predict for XP_002452461.1)

Subcellular
localization
TargetP

scret 6, other 4

(predict for XP_002452461.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8072478	sbi-r.1 for 8058458	sbi-r.1 for 8075160	zma-u.5 for 100282495	zma-u.5 for 100283339	osa-u.5 for 4341733	osa-u.5 for 4330145	tae-r.2 for 123157506	tae-r.2 for 542961	tae-r.2 for 100192162	hvu-r.1 for 123427207	hvu-r.1 for 123403711	bdi-r.1 for 100835637	bdi-r.1 for 100825578	bdi-r.1 for 100832099	ath-u.5 for AT5G20500	ath-u.5 for GRXC2	ath-u.5 for GRXC1	gma-u.5 for 100305517	gma-u.5 for 100527634	gma-u.5 for 100305955	sly-u.5 for 101247085	sly-u.5 for 101254986	sly-u.5 for 544298	bra-r.6 for 103873728	bra-r.6 for 103864232	bra-r.6 for 103863982	vvi-u.5 for 100244121	vvi-u.5 for 100241967	vvi-u.5 for 100260385	ppo-u.5 for 7457752	ppo-u.5 for 7484039	ppo-u.5 for 7495519	mtr-u.5 for 11438922	mtr-u.5 for 11438755	mtr-u.5 for 11430185	ghi-r.1 for 107892273	ghi-r.1 for 107939805	ghi-r.1 for 107888669	bna-r.1 for 106450550	bna-r.1 for 106446144	bna-r.1 for 106425765	sot-r.1 for 102600419	sot-r.1 for 102597992	sot-r.1 for 102591615	cit-r.1 for 102630010	cit-r.1 for 102625900	cit-r.1 for 102626795	nta-r.1 for 107801695	nta-r.1 for 107804854	nta-r.1 for 107814238	cre-r.1 for CHLRE_12g513750v5	cre-r.1 for CHLRE_12g550400v5

Please wait a moment.

Ortholog

Ortholog ID: 816

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

GRXC1

GRX2

Function^*

glutaredoxin-C4, chloroplastic

glutaredoxin-C8

monothiol glutaredoxin-S6

Grx_C4 - glutaredoxin subgroup I

glutaredoxin homolog 1

monothiol glutaredoxin-S6-like

glutaredoxin-C4, chloroplastic-like

glutaredoxin-C8

monothiol glutaredoxin-S6

glutaredoxin-C8

glutaredoxin-C6-like

monothiol glutaredoxin-S6

glutaredoxin-C8

glutaredoxin-C6

Glutaredoxin family protein

Thioredoxin superfamily protein

Glutaredoxin family protein

uncharacterized LOC100305517

uncharacterized LOC100527634

glutaredoxin family protein

glutaredoxin

glutaredoxin-C4

glutaredoxin-C1

glutaredoxin

glutaredoxin-C3

glutaredoxin

glutaredoxin-C3

glutaredoxin

glutaredoxin-C4

glutaredoxin

glutaredoxin-C3

glutaredoxin-C4

glutaredoxin-C2

glutaredoxin-C1-like

glutaredoxin-C1

glutaredoxin

glutaredoxin-C4

glutaredoxin-C3

uncharacterized LOC107784788

uncharacterized LOC107776599

glutaredoxin-C4-like

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	4
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	7
zma04145	Phagosome	7
zma04142	Lysosome	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	7
zma00020	Citrate cycle (TCA cycle)	3
zma01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4
osa03060	Protein export	3
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3
osa00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	2
tae00240	Pyrimidine metabolism	2
tae01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00010	Glycolysis / Gluconeogenesis	10
bdi01200	Carbon metabolism	10
bdi01230	Biosynthesis of amino acids	10
bdi00710	Carbon fixation by Calvin cycle	7
bdi00051	Fructose and mannose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath03060	Protein export	2
ath00510	N-Glycan biosynthesis	2
ath00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	4
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma03060	Protein export	3
gma00230	Purine metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	6
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00510	N-Glycan biosynthesis	4
sly00513	Various types of N-glycan biosynthesis	4
sly04141	Protein processing in endoplasmic reticulum	4
sly03040	Spliceosome	3
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00071	Fatty acid degradation	4
bra01212	Fatty acid metabolism	4
bra00410	beta-Alanine metabolism	2
bra01200	Carbon metabolism	2
bra00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	4
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2
ppo03040	Spliceosome	2
ppo00480	Glutathione metabolism	2
ppo00280	Valine, leucine and isoleucine degradation	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01240	Biosynthesis of cofactors	3
ghi00750	Vitamin B6 metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00562	Inositol phosphate metabolism	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	3
bna00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	5
sot04145	Phagosome	4
sot04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2
cit03050	Proteasome	2
cit04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	6
cit03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00195	Photosynthesis	4
cre03010	Ribosome	3
cre00710	Carbon fixation by Calvin cycle	2
cre01200	Carbon metabolism	2
cre00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03420	Nucleotide excision repair	3
cre03020	RNA polymerase	2
cre04120	Ubiquitin mediated proteolysis	2
cre04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

8072478

8058458

8075160

100282495

100283339

4330145

4329999

123157506

123129639

123149342

123427207

100835637

100825578

100832099

832172

836423

844073

100305517

100527634

100305955

101254986

544298

101268063

103845670

103837443

100244121

100241967

100260385

7495519

7496831

11438922

11438755

11430185

107888669

107897612

107897861

106446144

106422799

106347869

102597992

102577528

102625900

102626837

107784788

107776599

107784219

5728538

5719651

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	2	2	3	2	3	3	3	3	3	3	3	3	3	3	3	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8072478 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8072478 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**