ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8082854	pentatricopeptide repeat-containing protein At2g20540
zma-u.5	100280409	uncharacterized LOC100280409
osa-u.5	9268630	pentatricopeptide repeat-containing protein At2g20540
osa-u.5	4351099	pentatricopeptide repeat-containing protein At1g09190
hvu-r.1	123446316	pentatricopeptide repeat-containing protein At1g09190-like
bdi-r.1	104582647	pentatricopeptide repeat-containing protein At2g20540-like
ath-u.5	AT1G09190	Tetratricopeptide repeat (TPR)-like superfamily protein
gma-u.5	100805000	pentatricopeptide repeat-containing protein At1g09190
sly-u.5	101247663	pentatricopeptide repeat-containing protein At2g20540
sly-u.5	101244713	pentatricopeptide repeat-containing protein
bra-r.6	103871648	pentatricopeptide repeat-containing protein At1g09190
bra-r.6	103842597	pentatricopeptide repeat-containing protein At2g20540
vvi-u.5	100258012	pentatricopeptide repeat-containing protein At1g09190
mtr-u.5	11432005	pentatricopeptide repeat-containing protein At2g20540
mtr-u.5	11407190	pentatricopeptide repeat-containing protein At1g09190
ghi-r.1	107887002	pentatricopeptide repeat-containing protein At1g09190
ghi-r.1	107927178	pentatricopeptide repeat-containing protein At1g09190
sot-r.1	102580133	pentatricopeptide repeat-containing protein At2g20540-like
sot-r.1	102602131	pentatricopeptide repeat-containing protein At1g09190
cit-r.1	102621282	pentatricopeptide repeat-containing protein At2g20540
cit-r.1	102617057	pentatricopeptide repeat-containing protein At1g09190
nta-r.1	107825572	pentatricopeptide repeat-containing protein At2g20540-like
nta-r.1	107783794	pentatricopeptide repeat-containing protein At1g09190-like
nta-r.1	107761641	pentatricopeptide repeat-containing protein At1g09190-like

Annotation

functional annotation

KEGG

GO BP

GO:0009451 [list] [network] RNA modification

(378 genes)

IEA

GO CC

GO MF

GO:0003723 [list] [network] RNA binding	(1243 genes)	IEA
GO:0005515 [list] [network] protein binding	(4172 genes)	IEA

Protein

XP_002446813.1 [sequence] [blastp]
XP_002446814.2 [sequence] [blastp]
XP_021318190.1 [sequence] [blastp]
XP_021318191.1 [sequence] [blastp]
XP_021318192.1 [sequence] [blastp]
XP_021318193.1 [sequence] [blastp]
XP_021318194.1 [sequence] [blastp]
XP_021318195.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 9, pero 1	(predict for XP_002446813.1)
cyto 9, pero 1	(predict for XP_002446814.2)
cyto 9, pero 1	(predict for XP_021318190.1)
cyto 9, pero 1	(predict for XP_021318191.1)
cyto 9, pero 1	(predict for XP_021318192.1)
cyto 9, pero 1	(predict for XP_021318193.1)
cyto 9, pero 1	(predict for XP_021318194.1)
cyto 9, pero 1	(predict for XP_021318195.1)

Subcellular
localization
TargetP

mito 3	(predict for XP_002446813.1)
mito 3	(predict for XP_002446814.2)
mito 3	(predict for XP_021318190.1)
mito 3	(predict for XP_021318191.1)
mito 3	(predict for XP_021318192.1)
mito 3	(predict for XP_021318193.1)
mito 3	(predict for XP_021318194.1)
mito 3	(predict for XP_021318195.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8082854	zma-u.5 for 100280409	osa-u.5 for 9268630	osa-u.5 for 4351099	hvu-r.1 for 123446316	bdi-r.1 for 104582647	ath-u.5 for AT1G09190	gma-u.5 for 100805000	sly-u.5 for 101247663	sly-u.5 for 101244713	bra-r.6 for 103871648	bra-r.6 for 103842597	vvi-u.5 for 100258012	mtr-u.5 for 11432005	mtr-u.5 for 11407190	ghi-r.1 for 107887002	ghi-r.1 for 107927178	sot-r.1 for 102580133	sot-r.1 for 102602131	cit-r.1 for 102621282	cit-r.1 for 102617057	nta-r.1 for 107825572	nta-r.1 for 107783794	nta-r.1 for 107761641

Ortholog

Ortholog ID: 4040

Species

sbi

zma

osa

hvu

bdi

ath

gma

sly

bra

mtr

ghi

sot

cit

nta

Symbol

Function^*