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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8083992   calvin cycle protein CP12-1, chloroplastic 
 sbi-r.1   8070767   calvin cycle protein CP12-1, chloroplastic 
 zma-u.5   103634557   calvin cycle protein CP12-1, chloroplastic 
 zma-u.5   100281649   uncharacterized LOC100281649 
 osa-u.5   4332603   calvin cycle protein CP12-1, chloroplastic 
 osa-u.5   4325791   calvin cycle protein CP12-1, chloroplastic 
 tae-r.2   123043233   calvin cycle protein CP12-2, chloroplastic 
 tae-r.2   123092367   calvin cycle protein CP12-1, chloroplastic 
 tae-r.2   123051101   calvin cycle protein CP12-1, chloroplastic 
 hvu-r.1   123424399   calvin cycle protein CP12-2, chloroplastic-like 
 hvu-r.1   123448830   calvin cycle protein CP12-1, chloroplastic-like 
 bdi-r.1   100830724   calvin cycle protein CP12-2, chloroplastic 
 bdi-r.1   100834837   calvin cycle protein CP12-1, chloroplastic 
 ath-u.5   CP12-1   CP12 domain-containing protein 1 
 ath-u.5   CP12-2   CP12 domain-containing protein 2 
 gma-u.5   100814289   calvin cycle protein CP12-2, chloroplastic 
 gma-u.5   100812168   calvin cycle protein CP12-2, chloroplastic 
 gma-u.5   100812118   calvin cycle protein CP12-1, chloroplastic 
 sly-u.5   101268314   calvin cycle protein CP12-1, chloroplastic 
 sly-u.5   101267611   calvin cycle protein CP12-1, chloroplastic 
 bra-r.6   103843758   calvin cycle protein CP12-1, chloroplastic 
 bra-r.6   103830357   calvin cycle protein CP12-2, chloroplastic 
 bra-r.6   103842058   calvin cycle protein CP12-2, chloroplastic 
 vvi-u.5   100267103   calvin cycle protein CP12-1, chloroplastic 
 ppo-u.5   7481401   calvin cycle protein CP12-1, chloroplastic 
 ppo-u.5   7495216   calvin cycle protein CP12-2, chloroplastic 
 ppo-u.5   7494735   calvin cycle protein CP12-3, chloroplastic 
 mtr-u.5   11412272   calvin cycle protein CP12-2, chloroplastic 
 mtr-u.5   11432033   calvin cycle protein CP12-2, chloroplastic 
 ghi-r.1   107912321   calvin cycle protein CP12-2, chloroplastic 
 ghi-r.1   107940561   calvin cycle protein CP12-1, chloroplastic 
 ghi-r.1   107945995   calvin cycle protein CP12-1, chloroplastic 
 bna-r.1   125608400   calvin cycle protein CP12-1, chloroplastic 
 bna-r.1   125606883   calvin cycle protein CP12-1, chloroplastic-like 
 bna-r.1   106450428   calvin cycle protein CP12-1, chloroplastic 
 sot-r.1   102594918   calvin cycle protein CP12-1, chloroplastic 
 sot-r.1   102600488   calvin cycle protein CP12-1, chloroplastic 
 cit-r.1   102630113   calvin cycle protein CP12-2, chloroplastic 
 nta-r.1   107799104   calvin cycle protein CP12-1, chloroplastic-like 
 nta-r.1   107769806   calvin cycle protein CP12-2, chloroplastic 
 nta-r.1   107805556   calvin cycle protein CP12-2, chloroplastic-like 
 cre-r.1   CHLRE_08g380250v5   uncharacterized protein 

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Top 50 coexpressed genes to 8083992 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8083992 (sbi-r.1 coexpression data)

CoexMap"8083992"


sbiLOC8083992 | Entrez gene ID : 8083992      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 2 2 3 2 2 2 3 2 3 1 3 2 3 3 2 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0080153 [list] [network] negative regulation of reductive pentose-phosphate cycle  (3 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (560 genes)  IEA  
GO MF
Protein XP_002467982.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002467982.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002467982.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8083992
sbi-r.1
for
8070767
zma-u.5
for
103634557
zma-u.5
for
100281649
osa-u.5
for
4332603
osa-u.5
for
4325791
tae-r.2
for
123043233
tae-r.2
for
123092367
tae-r.2
for
123051101
hvu-r.1
for
123424399
hvu-r.1
for
123448830
bdi-r.1
for
100830724
bdi-r.1
for
100834837
ath-u.5
for
CP12-1
ath-u.5
for
CP12-2
gma-u.5
for
100814289
gma-u.5
for
100812168
gma-u.5
for
100812118
sly-u.5
for
101268314
sly-u.5
for
101267611
bra-r.6
for
103843758
bra-r.6
for
103830357
bra-r.6
for
103842058
vvi-u.5
for
100267103
ppo-u.5
for
7481401
ppo-u.5
for
7495216
ppo-u.5
for
7494735
mtr-u.5
for
11412272
mtr-u.5
for
11432033
ghi-r.1
for
107912321
ghi-r.1
for
107940561
ghi-r.1
for
107945995
bna-r.1
for
125608400
bna-r.1
for
125606883
bna-r.1
for
106450428
sot-r.1
for
102594918
sot-r.1
for
102600488
cit-r.1
for
102630113
nta-r.1
for
107799104
nta-r.1
for
107769806
nta-r.1
for
107805556
cre-r.1
for
CHLRE_08g380250v5


Ortholog ID: 2462
Species sbi sbi zma zma osa osa tae tae tae hvu hvu bdi bdi ath ath gma gma gma sly sly bra bra bra vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna sot sot cit nta nta nta cre
Symbol LOC8083992 LOC8070767 LOC103634557 LOC100281649 LOC4332603 LOC4325791 LOC123051101 LOC123085665 LOC123097681 LOC123424399 LOC123448830 LOC100830724 LOC100834837 CP12-1 CP12-2 LOC100812168 LOC100812118 LOC100803973 LOC101268314 LOC101267611 LOC103842058 LOC103858245 LOC103866383 LOC100267103 LOC7481401 LOC7495216 LOC7494735 LOC11412272 LOC11432033 LOC107945995 LOC107909995 LOC107923324 LOC106451801 LOC106363667 LOC106451992 LOC102594918 LOC102600488 LOC102630113 LOC107799104 LOC107805556 LOC142171487 CHLRE_08g380250v5
Function* calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic uncharacterized LOC100281649 calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-2, chloroplastic-like calvin cycle protein CP12-1, chloroplastic-like calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-1, chloroplastic CP12 domain-containing protein 1 CP12 domain-containing protein 2 calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic-like calvin cycle protein CP12-2, chloroplastic-like calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-1, chloroplastic calvin cycle protein CP12-2, chloroplastic calvin cycle protein CP12-1, chloroplastic-like calvin cycle protein CP12-2, chloroplastic-like calvin cycle protein CP12-1, chloroplastic-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 6
osa00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 10
ath00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 10
gma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00053 Ascorbate and aldarate metabolism 2
gma00071 Fatty acid degradation 2
gma00280 Valine, leucine and isoleucine degradation 2
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 11
gma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 10
sly00190 Oxidative phosphorylation 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 12
ppo00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00630 Glyoxylate and dicarboxylate metabolism 7
ghi00710 Carbon fixation by Calvin cycle 7
ghi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 3
ghi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 7
sot00710 Carbon fixation by Calvin cycle 6
sot00630 Glyoxylate and dicarboxylate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 7
cre00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8083992 8070767 103634557 100281649 4332603 4325791 123051101 123085665 123097681 123424399 123448830 100830724 100834837 819353 825414 100812168 100812118 100803973 101268314 101267611 103842058 103858245 103866383 100267103 7481401 7495216 7494735 11412272 11432033 107945995 107909995 107923324 106451801 106363667 106451992 102594918 102600488 102630113 107799104 107805556 142171487 5719874
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