ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8086409	uncharacterized LOC8086409
sbi-r.1	8077518	uncharacterized LOC8077518
zma-u.5	100383342	D-alanine--D-alanine ligase family
osa-u.5	4344370	uncharacterized LOC4344370
tae-r.2	123043572	uncharacterized LOC123043572
tae-r.2	123187386	uncharacterized LOC123187386
tae-r.2	123051441	uncharacterized LOC123051441
hvu-r.1	123425193	uncharacterized LOC123425193
bdi-r.1	100840063	uncharacterized LOC100840063
ath-u.5	AT3G08840	D-alanine-D-alanine ligase family
gma-u.5	100775955	uncharacterized LOC100775955
gma-u.5	100819595	uncharacterized LOC100819595
sly-u.5	104649147	uncharacterized LOC104649147
sly-u.5	101268046	uncharacterized LOC101268046
bra-r.6	103859329	uncharacterized LOC103859329
bra-r.6	103830077	uncharacterized LOC103830077
vvi-u.5	100265424	uncharacterized LOC100265424
ppo-u.5	7468075	uncharacterized LOC7468075
mtr-u.5	11407566	uncharacterized LOC11407566
ghi-r.1	107948973	D-alanine--D-alanine ligase
ghi-r.1	107899599	uncharacterized LOC107899599
bna-r.1	106451640	uncharacterized LOC106451640
bna-r.1	106442173	uncharacterized LOC106442173
bna-r.1	106430373	uncharacterized LOC106430373
sot-r.1	102602208	uncharacterized LOC102602208
cit-r.1	102620172	uncharacterized LOC102620172
nta-r.1	107762573	uncharacterized LOC107762573
nta-r.1	107782046	uncharacterized LOC107782046
cre-r.1	CHLRE_15g635650v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0009252 [list] [network] peptidoglycan biosynthetic process

(2 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast

(560 genes)

IEA

GO MF

GO:0008716 [list] [network] D-alanine-D-alanine ligase activity	(2 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(2038 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2084 genes)	IEA

Protein

XP_002461456.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 3, cyto_mito 2, nucl 1, plas 1, nucl_plas 1

(predict for XP_002461456.2)

Subcellular
localization
TargetP

chlo 4, other 4

(predict for XP_002461456.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8086409	sbi-r.1 for 8077518	zma-u.5 for 100383342	osa-u.5 for 4344370	tae-r.2 for 123043572	tae-r.2 for 123187386	tae-r.2 for 123051441	hvu-r.1 for 123425193	bdi-r.1 for 100840063	ath-u.5 for AT3G08840	gma-u.5 for 100775955	gma-u.5 for 100819595	sly-u.5 for 104649147	sly-u.5 for 101268046	bra-r.6 for 103859329	bra-r.6 for 103830077	vvi-u.5 for 100265424	ppo-u.5 for 7468075	mtr-u.5 for 11407566	ghi-r.1 for 107948973	ghi-r.1 for 107899599	bna-r.1 for 106451640	bna-r.1 for 106442173	bna-r.1 for 106430373	sot-r.1 for 102602208	cit-r.1 for 102620172	nta-r.1 for 107762573	nta-r.1 for 107782046	cre-r.1 for CHLRE_15g635650v5

Ortholog

Ortholog ID: 7200

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC8086409

uncharacterized LOC8077518

D-alanine--D-alanine ligase family

uncharacterized LOC4344370

uncharacterized LOC123043572

uncharacterized LOC123187386

uncharacterized LOC123051441

uncharacterized LOC123425193

uncharacterized LOC100840063

D-alanine-D-alanine ligase family

uncharacterized LOC100775955

uncharacterized LOC100819595

uncharacterized LOC104649147

uncharacterized LOC101268046

uncharacterized LOC103859329

uncharacterized LOC103830077

uncharacterized LOC100265424

uncharacterized LOC7468075

uncharacterized LOC11407566

D-alanine--D-alanine ligase

uncharacterized LOC107899599

uncharacterized LOC106451640

uncharacterized LOC106430373

uncharacterized LOC106353000

uncharacterized LOC102602208

uncharacterized LOC102620172

uncharacterized LOC107762573

uncharacterized LOC107782046

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	5
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa00260	Glycine, serine and threonine metabolism	2
osa00270	Cysteine and methionine metabolism	2
osa00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3
tae00604	Glycosphingolipid biosynthesis - ganglio series	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3
tae00604	Glycosphingolipid biosynthesis - ganglio series	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	4
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi00100	Steroid biosynthesis	2
bdi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	4
gma00220	Arginine biosynthesis	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00220	Arginine biosynthesis	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00910	Nitrogen metabolism	2
gma00260	Glycine, serine and threonine metabolism	2
gma00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00010	Glycolysis / Gluconeogenesis	3
sly00020	Citrate cycle (TCA cycle)	3
sly00620	Pyruvate metabolism	3
sly00785	Lipoic acid metabolism	3
sly01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	3
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00410	beta-Alanine metabolism	3
mtr03020	RNA polymerase	2
mtr00240	Pyrimidine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	10
bna04075	Plant hormone signal transduction	5
bna00460	Cyanoamino acid metabolism	2
bna00500	Starch and sucrose metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	5
bna04082	Neuroactive ligand signaling	4
bna00460	Cyanoamino acid metabolism	2
bna00500	Starch and sucrose metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00904	Diterpenoid biosynthesis	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00904	Diterpenoid biosynthesis	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

8086409

8077518

100383342

4344370

123043572

123187386

123051441

123425193

100840063

820031

100775955

100819595

104649147

101268046

103859329

103830077

100265424

7468075

11407566

107948973

107899599

106451640

106430373

106353000

102602208

102620172

107762573

107782046

5726155

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8086409 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8086409 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	1	1	3	1	1	1	2	2	2	1	1	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8086409 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8086409 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**