ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102604792	uncharacterized LOC102604792
sot-r.1	102579257	uncharacterized LOC102579257
sot-r.1	102587481	uncharacterized LOC102587481
sot-r.1	107058215	uncharacterized LOC107058215
sly-u.5	101252746	endochitinase A-like
sly-u.5	101257555	uncharacterized LOC101257555
sly-u.5	101251877	uncharacterized LOC101251877
nta-r.1	107789042	uncharacterized LOC107789042
nta-r.1	107762420	uncharacterized LOC107762420
nta-r.1	107765290	uncharacterized LOC107765290
ath-u.5	AT2G28540	RNA binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT3G45630	RNA binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G60170	RNA binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100796804	uncharacterized LOC100796804
gma-u.5	100805811	uncharacterized LOC100805811
gma-u.5	100807521	uncharacterized LOC100807521
bra-r.6	103864897	uncharacterized LOC103864897
bra-r.6	103829751	uncharacterized LOC103829751
vvi-u.5	100267264	general negative regulator of transcription subunit 4
vvi-u.5	104880937	uncharacterized LOC104880937
ppo-u.5	7465293	uncharacterized LOC7465293
ppo-u.5	18100238	uncharacterized LOC18100238
ppo-u.5	7488143	uncharacterized LOC7488143
mtr-u.5	25484052	uncharacterized LOC25484052
mtr-u.5	11406476	uncharacterized LOC11406476
mtr-u.5	11417361	uncharacterized LOC11417361
ghi-r.1	107959061	uncharacterized LOC107959061
ghi-r.1	121212695	uncharacterized LOC121212695
ghi-r.1	107954061	uncharacterized LOC107954061
bna-r.1	106446890	uncharacterized LOC106446890
bna-r.1	125578995	uncharacterized LOC125578995
bna-r.1	111212893	uncharacterized LOC111212893
cit-r.1	102622069	uncharacterized LOC102622069
cit-r.1	102631197	uncharacterized LOC102631197
osa-u.5	4351244	uncharacterized LOC4351244
osa-u.5	4349535	uncharacterized LOC4349535
zma-u.5	100384257	RNA binding (RRM/RBD/RNP motifs) family protein
zma-u.5	103647171	uncharacterized LOC103647171
tae-r.2	123103249	uncharacterized LOC123103249
tae-r.2	123111438	uncharacterized LOC123111438
tae-r.2	123120563	uncharacterized LOC123120563
hvu-r.1	123398966	uncharacterized LOC123398966
sbi-r.1	110429916	uncharacterized LOC110429916
sbi-r.1	8059223	uncharacterized LOC8059223
bdi-r.1	100841785	uncharacterized LOC100841785

Top 50 coexpressed genes to 102604792 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102604792 (sot-r.1 coexpression data)

CoexMap"102604792"

[Cytoscape]

Annotation

functional annotation

KEGG

sot03018 [list] [network] RNA degradation (117 genes)

GO BP

GO:0016567 [list] [network] protein ubiquitination

(305 genes)

IEA

GO CC

GO:0030014 [list] [network] CCR4-NOT complex

(35 genes)

IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity	(358 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1335 genes)	IEA

Protein

XP_006359335.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1, vacu 1

(predict for XP_006359335.1)

Subcellular
localization
TargetP

other 9

(predict for XP_006359335.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102604792	sot-r.1 for 102579257	sot-r.1 for 102587481	sot-r.1 for 107058215	sly-u.5 for 101252746	sly-u.5 for 101257555	sly-u.5 for 101251877	nta-r.1 for 107789042	nta-r.1 for 107762420	nta-r.1 for 107765290	ath-u.5 for AT2G28540	ath-u.5 for AT3G45630	ath-u.5 for AT5G60170	gma-u.5 for 100796804	gma-u.5 for 100805811	gma-u.5 for 100807521	bra-r.6 for 103864897	bra-r.6 for 103829751	vvi-u.5 for 100267264	vvi-u.5 for 104880937	ppo-u.5 for 7465293	ppo-u.5 for 18100238	ppo-u.5 for 7488143	mtr-u.5 for 25484052	mtr-u.5 for 11406476	mtr-u.5 for 11417361	ghi-r.1 for 107959061	ghi-r.1 for 121212695	ghi-r.1 for 107954061	bna-r.1 for 106446890	bna-r.1 for 125578995	bna-r.1 for 111212893	cit-r.1 for 102622069	cit-r.1 for 102631197	osa-u.5 for 4351244	osa-u.5 for 4349535	zma-u.5 for 100384257	zma-u.5 for 103647171	tae-r.2 for 123103249	tae-r.2 for 123111438	tae-r.2 for 123120563	hvu-r.1 for 123398966	sbi-r.1 for 110429916	sbi-r.1 for 8059223	bdi-r.1 for 100841785

Ortholog

Ortholog ID: 1609

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC102579257

uncharacterized LOC107058215

uncharacterized LOC102604840

endochitinase A-like

uncharacterized LOC101257555

uncharacterized LOC101251877

uncharacterized LOC107765290

uncharacterized LOC107767333

uncharacterized LOC107824709

RNA binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC100807521

uncharacterized LOC100801880

uncharacterized LOC100780302

uncharacterized LOC103864897

general negative regulator of transcription subunit 4

uncharacterized LOC104880937

uncharacterized LOC7465293

uncharacterized LOC18100238

uncharacterized LOC7488143

uncharacterized LOC25484052

uncharacterized LOC11406476

uncharacterized LOC11417361

uncharacterized LOC107959061

uncharacterized LOC121212695

uncharacterized LOC107932928

uncharacterized LOC106446890

uncharacterized LOC106419712

uncharacterized LOC106393111

uncharacterized LOC102622069

uncharacterized LOC102631197

uncharacterized LOC4351244

uncharacterized LOC4349535

RNA binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC100381591

uncharacterized LOC123103249

uncharacterized LOC123111438

uncharacterized LOC123120563

uncharacterized LOC123398966

uncharacterized LOC110429916

uncharacterized LOC8059223

uncharacterized LOC100841785

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	3
ath03250	Viral life cycle - HIV-1	3
ath03018	RNA degradation	3
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	4
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	4
gma03018	RNA degradation	3
gma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	4
ghi03083	Polycomb repressive complex	3
ghi03018	RNA degradation	2
ghi03015	mRNA surveillance pathway	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi03018	RNA degradation	3
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna04075	Plant hormone signal transduction	2
bna04626	Plant-pathogen interaction	2
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna03015	mRNA surveillance pathway	2
bna04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae03018	RNA degradation	4
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03250	Viral life cycle - HIV-1	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

102579257

107058215

102604840

101252746

101257555

101251877

107765290

107767333

107824709

817402

823705

836139

100807521

100801880

100780302

103864897

100267264

104880937

7465293

18100238

7488143

25484052

11406476

11417361

107959061

121212695

107932928

106446890

106419712

106393111

102622069

102631197

4351244

4349535

100384257

100381591

123103249

123111438

123120563

123398966

110429916

8059223

100841785

The preparation time of this page was 2.8 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	2	2	3	3	3	3	2	2	2	3	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102604792 (sot-r.1 coexpression data)

Top 50 enrichment test to 102604792 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**