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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 sly-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 nta-r.1   rbcL   RuBisCO large subunit 
 ath-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 gma-u.5   rbcL   RuBisCO large subunit 
 bra-r.6   117129780   ribulose bisphosphate carboxylase large chain 
 bra-r.6   117125990   ribulose bisphosphate carboxylase large chain 
 vvi-u.5   rbcL   RuBisCO large subunit 
 vvi-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 ppo-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 mtr-u.5   120580927   ribulose bisphosphate carboxylase large chain 
 mtr-u.5   120580073   ribulose bisphosphate carboxylase large chain 
 mtr-u.5   120576791   ribulose bisphosphate carboxylase large chain 
 ghi-r.1   rbcL   RuBisCO large subunit 
 ghi-r.1   121213913   ribulose bisphosphate carboxylase large chain-like 
 ghi-r.1   121231910   ribulose bisphosphate carboxylase large chain-like 
 bna-r.1   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 cit-r.1   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 cit-r.1   112496878   ribulose bisphosphate carboxylase large chain-like 
 osa-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 zma-u.5   118474769   ribulose bisphosphate carboxylase large chain 
 zma-u.5   118474757   ribulose bisphosphate carboxylase large chain-like 
 zma-u.5   118474714   ribulose bisphosphate carboxylase large chain 
 tae-r.2   100049018   ribulose bisphosphate carboxylase large chain-like 
 tae-r.2   123055349   ribulose bisphosphate carboxylase large chain 
 hvu-r.1   123421670   ribulose bisphosphate carboxylase large chain 
 hvu-r.1   123421546   ribulose bisphosphate carboxylase large chain 
 hvu-r.1   123421236   ribulose bisphosphate carboxylase large chain 
 sbi-r.1   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 bdi-r.1   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 bdi-r.1   112271745   ribulose bisphosphate carboxylase large chain-like 

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Top 50 coexpressed genes to rbcL (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to rbcL (sot-r.1 coexpression data)

CoexMap"4099985"


sotrbcL | Entrez gene ID : 4099985      
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 1 1 1 1 1 2 2 1 3 3 1 2 1 3 2 3 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot00630 [list] [network] Glyoxylate and dicarboxylate metabolism (83 genes)
sot00710 [list] [network] Carbon fixation by Calvin cycle (82 genes)
sot01200 [list] [network] Carbon metabolism (293 genes)
GO BP
GO CC
GO MF
Protein YP_635647.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  pero 2,  mito 1  (predict for YP_635647.1)
Subcellular
localization
TargetP
other 8  (predict for YP_635647.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
rbcL
sly-u.5
for
rbcL
nta-r.1
for
rbcL
ath-u.5
for
rbcL
gma-u.5
for
rbcL
bra-r.6
for
117129780
bra-r.6
for
117125990
vvi-u.5
for
rbcL
vvi-u.5
for
rbcL
ppo-u.5
for
rbcL
mtr-u.5
for
120580927
mtr-u.5
for
120580073
mtr-u.5
for
120576791
ghi-r.1
for
rbcL
ghi-r.1
for
121213913
ghi-r.1
for
121231910
bna-r.1
for
rbcL
cit-r.1
for
rbcL
cit-r.1
for
112496878
osa-u.5
for
rbcL
zma-u.5
for
118474769
zma-u.5
for
118474757
zma-u.5
for
118474714
tae-r.2
for
100049018
tae-r.2
for
123055349
hvu-r.1
for
123421670
hvu-r.1
for
123421546
hvu-r.1
for
123421236
sbi-r.1
for
rbcL
bdi-r.1
for
rbcL
bdi-r.1
for
112271745


Ortholog ID: 1646
Species sot sly nta ath gma bra bra vvi vvi ppo mtr mtr mtr ghi ghi ghi bna cit cit osa zma zma zma tae tae hvu hvu sbi bdi bdi
Symbol rbcL rbcL rbcL rbcL rbcL LOC117129780 LOC117125990 rbcL rbcL rbcL LOC120580927 LOC120576791 rbcL rbcL LOC121231910 LOC121226665 rbcL rbcL LOC112496878 rbcL LOC118474769 LOC118474757 LOC103643185 LOC123123053 LOC123166275 LOC123421966 LOC123422470 rbcL rbcL LOC112271745
Function* ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit RuBisCO large subunit ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit RuBisCO large subunit ribulose bisphosphate carboxylase large chain-like ribulose bisphosphate carboxylase large chain ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain-like ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain-like ribulose bisphosphate carboxylase large chain-like ribulose bisphosphate carboxylase large chain-like ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 15
sot00190 Oxidative phosphorylation 4
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00190 Oxidative phosphorylation 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 16
nta00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 17
ath00190 Oxidative phosphorylation 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
bra00190 Oxidative phosphorylation 4
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 13
vvi03010 Ribosome 4
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 13
vvi03010 Ribosome 4
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 12
ppo00190 Oxidative phosphorylation 6
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 8
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00195 Photosynthesis 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00195 Photosynthesis 4
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00195 Photosynthesis 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 14
cit00190 Oxidative phosphorylation 4
cit01200 Carbon metabolism 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00190 Oxidative phosphorylation 3
cit00970 Aminoacyl-tRNA biosynthesis 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 10
osa00190 Oxidative phosphorylation 4
osa03010 Ribosome 3
osa00970 Aminoacyl-tRNA biosynthesis 3
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 10
zma00710 Carbon fixation by Calvin cycle 10
zma01200 Carbon metabolism 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 9
zma00710 Carbon fixation by Calvin cycle 9
zma01200 Carbon metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 9
zma00710 Carbon fixation by Calvin cycle 9
zma01200 Carbon metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 7
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00190 Oxidative phosphorylation 2
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 7
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00190 Oxidative phosphorylation 4
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 18
hvu00710 Carbon fixation by Calvin cycle 18
hvu01200 Carbon metabolism 18
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 19
hvu00710 Carbon fixation by Calvin cycle 19
hvu01200 Carbon metabolism 19
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00195 Photosynthesis 4
sbi03020 RNA polymerase 3
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 8
bdi00190 Oxidative phosphorylation 7
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 8
bdi00190 Oxidative phosphorylation 6
bdi03020 RNA polymerase 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4099985 3950460 800513 844754 3989271 117129780 117125990 4025045 7498516 4929677 120580927 120576791 5333101 3989157 121231910 121226665 11542073 4271213 112496878 3131463 118474769 118474757 103643185 123123053 123166275 123421966 123422470 4549167 6439897 112271745
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