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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121231910   ribulose bisphosphate carboxylase large chain-like 
 ath-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 gma-u.5   rbcL   RuBisCO large subunit 
 vvi-u.5   rbcL   RuBisCO large subunit 
 vvi-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 ppo-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 mtr-u.5   120580927   ribulose bisphosphate carboxylase large chain 
 mtr-u.5   120580073   ribulose bisphosphate carboxylase large chain 
 mtr-u.5   120576791   ribulose bisphosphate carboxylase large chain 
 sly-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 osa-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 zma-u.5   118474331   ribulose bisphosphate carboxylase large chain 
 zma-u.5   118473922   ribulose bisphosphate carboxylase large chain-like 
 zma-u.5   118474444   ribulose bisphosphate carboxylase large chain-like 

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Top 50 coexpressed genes to 121231910 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121231910 (ghi-r.1 coexpression data)

CoexMap"121231910"


ghiLOC121231910 | Entrez gene ID : 121231910    
Species ghi ath gma vvi ppo mtr sly osa zma cre cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 1 2 1 3 1 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00630 [list] [network] Glyoxylate and dicarboxylate metabolism (192 genes)
ghi00710 [list] [network] Carbon fixation by Calvin cycle (194 genes)
ghi01200 [list] [network] Carbon metabolism (681 genes)
GO BP
GO:0015977 [list] [network] carbon fixation  (19 genes)  IEA  
GO CC
GO MF
GO:0016984 [list] [network] ribulose-bisphosphate carboxylase activity  (12 genes)  IEA  
GO:0000287 [list] [network] magnesium ion binding  (292 genes)  IEA  
Protein XP_040972898.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  mito 1,  pero 1  (predict for XP_040972898.1)
Subcellular
localization
TargetP
other 8  (predict for XP_040972898.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121231910

.
ath-u.5
for
rbcL

.
gma-u.5
for
rbcL

.
vvi-u.5
for
rbcL

.
vvi-u.5
for
rbcL

.
ppo-u.5
for
rbcL

.
mtr-u.5
for
120580927

.
mtr-u.5
for
120580073

.
mtr-u.5
for
120576791

.
sly-u.5
for
rbcL

.
osa-u.5
for
rbcL

.
zma-u.5
for
118474331

.
zma-u.5
for
118473922

.
zma-u.5
for
118474444

.


Ortholog ID: 1646
Species ath gma sly osa zma zma bra bra vvi vvi ppo mtr mtr tae hvu ghi ghi bna sbi sot cit cit bdi bdi nta
Symbol rbcL rbcL rbcL rbcL LOC118474757 LOC118474769 LOC117129780 LOC117125990 rbcL rbcL rbcL LOC120576791 LOC120580927 LOC123166275 LOC123422470 LOC121231910 rbcL rbcL rbcL rbcL rbcL LOC112496878 LOC112271745 rbcL rbcL
Function* ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain-like ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain-like RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain-like ribulose bisphosphate carboxylase large chain-like ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit RuBisCO large subunit
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 17
ath00190 Oxidative phosphorylation 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00190 Oxidative phosphorylation 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 10
osa00190 Oxidative phosphorylation 4
osa03010 Ribosome 3
osa00970 Aminoacyl-tRNA biosynthesis 3
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 9
zma00710 Carbon fixation by Calvin cycle 9
zma01200 Carbon metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 10
zma00710 Carbon fixation by Calvin cycle 10
zma01200 Carbon metabolism 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
bra00190 Oxidative phosphorylation 4
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 13
vvi03010 Ribosome 4
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 13
vvi03010 Ribosome 4
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 12
ppo00190 Oxidative phosphorylation 6
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 7
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00190 Oxidative phosphorylation 4
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 19
hvu00710 Carbon fixation by Calvin cycle 19
hvu01200 Carbon metabolism 19
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00195 Photosynthesis 4
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00195 Photosynthesis 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00195 Photosynthesis 4
sbi03020 RNA polymerase 3
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 15
sot00190 Oxidative phosphorylation 4
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 14
cit00190 Oxidative phosphorylation 4
cit01200 Carbon metabolism 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00190 Oxidative phosphorylation 3
cit00970 Aminoacyl-tRNA biosynthesis 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 8
bdi00190 Oxidative phosphorylation 6
bdi03020 RNA polymerase 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 8
bdi00190 Oxidative phosphorylation 7
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 16
nta00190 Oxidative phosphorylation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844754 3989271 3950460 3131463 118474757 118474769 117129780 117125990 7498516 4025045 4929677 120576791 120580927 123166275 123422470 121231910 3989157 11542073 4549167 4099985 4271213 112496878 112271745 6439897 800513
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