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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 ath-r.7   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 ath-e.2   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 gma-u.5   rbcL   RuBisCO large subunit 
 vvi-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 vvi-u.5   rbcL   RuBisCO large subunit 
 ppo-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 mtr-u.5   120576791   ribulose bisphosphate carboxylase large chain 
 mtr-u.5   120580073   ribulose bisphosphate carboxylase large chain 
 mtr-u.5   120580927   ribulose bisphosphate carboxylase large chain 
 sly-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 osa-u.5   rbcL   ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 
 zma-u.5   118474841   ribulose bisphosphate carboxylase large chain 
 zma-u.5   118474444   ribulose bisphosphate carboxylase large chain-like 
 zma-u.5   118474714   ribulose bisphosphate carboxylase large chain 

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Top 50 coexpressed genes to rbcL (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to rbcL (ath-u.5 coexpression data)

CoexMap"844754"


athrbcL | Entrez gene ID : 844754    
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 2 1 3 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (81 genes)
ath00710 [list] [network] Carbon fixation by Calvin cycle (71 genes)
ath01200 [list] [network] Carbon metabolism (275 genes)
GO BP
GO CC
GO MF
Protein NP_051067.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  mito 2,  pero 2  (predict for NP_051067.1)
Subcellular
localization
TargetP
other 8  (predict for NP_051067.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
rbcL
ath-r.7
for
rbcL
ath-e.2
for
rbcL
gma-u.5
for
rbcL
vvi-u.5
for
rbcL
vvi-u.5
for
rbcL
ppo-u.5
for
rbcL
mtr-u.5
for
120576791
mtr-u.5
for
120580073
mtr-u.5
for
120580927
sly-u.5
for
rbcL
osa-u.5
for
rbcL
zma-u.5
for
118474841
zma-u.5
for
118474444
zma-u.5
for
118474714


Ortholog ID: 1646
Species ath bra bra bna ghi ghi cit cit gma vvi vvi ppo mtr mtr sly sot nta osa zma zma tae hvu sbi bdi bdi
Symbol rbcL LOC117129780 LOC117125990 rbcL LOC121231910 rbcL rbcL LOC112496878 rbcL rbcL rbcL rbcL LOC120576791 LOC120580927 rbcL rbcL rbcL rbcL LOC118474757 LOC118474769 LOC123166275 LOC123422470 rbcL LOC112271745 rbcL
Function* ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain-like RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain-like RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit RuBisCO large subunit ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain-like ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose bisphosphate carboxylase large chain ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit ribulose bisphosphate carboxylase large chain-like ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 17
ath00190 Oxidative phosphorylation 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
bra00190 Oxidative phosphorylation 4
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00195 Photosynthesis 4
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00195 Photosynthesis 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 14
cit00190 Oxidative phosphorylation 4
cit01200 Carbon metabolism 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00190 Oxidative phosphorylation 3
cit00970 Aminoacyl-tRNA biosynthesis 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 13
vvi03010 Ribosome 4
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 13
vvi03010 Ribosome 4
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 12
ppo00190 Oxidative phosphorylation 6
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00190 Oxidative phosphorylation 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 15
sot00190 Oxidative phosphorylation 4
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 16
nta00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 10
osa00190 Oxidative phosphorylation 4
osa03010 Ribosome 3
osa00970 Aminoacyl-tRNA biosynthesis 3
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 9
zma00710 Carbon fixation by Calvin cycle 9
zma01200 Carbon metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 10
zma00710 Carbon fixation by Calvin cycle 10
zma01200 Carbon metabolism 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 7
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00190 Oxidative phosphorylation 4
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 19
hvu00710 Carbon fixation by Calvin cycle 19
hvu01200 Carbon metabolism 19
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00195 Photosynthesis 4
sbi03020 RNA polymerase 3
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 8
bdi00190 Oxidative phosphorylation 6
bdi03020 RNA polymerase 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 8
bdi00190 Oxidative phosphorylation 7
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844754 117129780 117125990 11542073 121231910 3989157 4271213 112496878 3989271 7498516 4025045 4929677 120576791 120580927 3950460 4099985 800513 3131463 118474757 118474769 123166275 123422470 4549167 112271745 6439897
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