ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107952030	small RNA degrading nuclease 5
ghi-r.1	107910416	small RNA degrading nuclease 5
ath-u.5	AT5G25800	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
bra-r.6	103854733	small RNA degrading nuclease 5
bna-r.1	106348551	small RNA degrading nuclease 5-like
bna-r.1	106348763	small RNA degrading nuclease 5-like
bna-r.1	106382657	small RNA degrading nuclease 5-like
cit-r.1	102612254	small RNA degrading nuclease 5
gma-u.5	100802793	small RNA degrading nuclease 5
gma-u.5	100796963	small RNA degrading nuclease 5
vvi-u.5	100242014	small RNA degrading nuclease 5
ppo-u.5	7469197	small RNA degrading nuclease 5
mtr-u.5	25482424	small RNA degrading nuclease 5
sly-u.5	101258362	small RNA degrading nuclease 5
sot-r.1	102601294	small RNA degrading nuclease 5
nta-r.1	107796462	small RNA degrading nuclease 5
nta-r.1	107815163	small RNA degrading nuclease 5-like
osa-u.5	9269093	small RNA degrading nuclease 5
zma-u.5	100501283	uncharacterized LOC100501283
zma-u.5	100383366	Small RNA degrading nuclease 5
tae-r.2	123070968	small RNA degrading nuclease 5
tae-r.2	123079355	small RNA degrading nuclease 5
tae-r.2	123062223	small RNA degrading nuclease 5
hvu-r.1	123444547	small RNA degrading nuclease 5
sbi-r.1	110429827	small RNA degrading nuclease 5
bdi-r.1	100836381	small RNA degrading nuclease 5
cre-r.1	CHLRE_14g610663v5	uncharacterized protein

Annotation

functional annotation

Function

small RNA degrading nuclease 5

KEGG

ghi03008 [list] [network] Ribosome biogenesis in eukaryotes (1571 genes)

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:0004527 [list] [network] exonuclease activity	(176 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(9083 genes)	IEA

Protein

XP_016742758.2 [sequence] [blastp]
XP_016742759.2 [sequence] [blastp]
XP_040947098.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 2, cyto 1	(predict for XP_016742758.2)
chlo 6, cyto 4	(predict for XP_016742759.2)
chlo 6, cyto 4	(predict for XP_040947098.1)

Subcellular
localization
TargetP

other 9	(predict for XP_016742758.2)
scret 7	(predict for XP_016742759.2)
scret 7	(predict for XP_040947098.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107952030	ghi-r.1 for 107910416	ath-u.5 for AT5G25800	bra-r.6 for 103854733	bna-r.1 for 106348551	bna-r.1 for 106348763	bna-r.1 for 106382657	cit-r.1 for 102612254	gma-u.5 for 100802793	gma-u.5 for 100796963	vvi-u.5 for 100242014	ppo-u.5 for 7469197	mtr-u.5 for 25482424	sly-u.5 for 101258362	sot-r.1 for 102601294	nta-r.1 for 107796462	nta-r.1 for 107815163	osa-u.5 for 9269093	zma-u.5 for 100501283	zma-u.5 for 100383366	tae-r.2 for 123070968	tae-r.2 for 123079355	tae-r.2 for 123062223	hvu-r.1 for 123444547	sbi-r.1 for 110429827	bdi-r.1 for 100836381	cre-r.1 for CHLRE_14g610663v5

Please wait a moment.

Ortholog

Ortholog ID: 7737

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

small RNA degrading nuclease 5

Polynucleotidyl transferase, ribonuclease H-like superfamily protein

small RNA degrading nuclease 5

small RNA degrading nuclease 5-like

small RNA degrading nuclease 5

small RNA degrading nuclease 5-like

small RNA degrading nuclease 5

uncharacterized LOC100501283

Small RNA degrading nuclease 5

small RNA degrading nuclease 5

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03018	RNA degradation	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03018	RNA degradation	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5
bna03018	RNA degradation	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma03008	Ribosome biogenesis in eukaryotes	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	2
sly03015	mRNA surveillance pathway	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00740	Riboflavin metabolism	3
nta01240	Biosynthesis of cofactors	3
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma03030	DNA replication	2
zma03410	Base excision repair	2
zma04120	Ubiquitin mediated proteolysis	2
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae00970	Aminoacyl-tRNA biosynthesis	2
tae03022	Basal transcription factors	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03013	Nucleocytoplasmic transport	4
tae00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04122	Sulfur relay system	2

Expression

Expression pattern

Entrez Gene ID^*

107952030

107910416

832649

103854733

106348551

106382657

106403684

102612254

100802793

100796963

100242014

7469197

25482424

101258362

102601294

107796462

107815163

9269093

100501283

100383366

123070968

123079355

123062223

123444547

110429827

100836381

5724570

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107952030 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107952030 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	1	3	1	2	1	1	1	1	1	2	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107952030 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107952030 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**