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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121229338   pentatricopeptide repeat-containing protein At3g29230 
 ghi-r.1   107906451   pentatricopeptide repeat-containing protein At3g29230 
 ath-u.5   AT1G13410   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103836103   pentatricopeptide repeat-containing protein At4g02750 
 cit-r.1   102619843   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 gma-u.5   100818133   pentatricopeptide repeat-containing protein At3g29230 
 vvi-u.5   100257772   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 ppo-u.5   7488362   pentatricopeptide repeat-containing protein At3g29230 
 mtr-u.5   25501384   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 sly-u.5   101246348   pentatricopeptide repeat-containing protein 
 sot-r.1   102602917   pentatricopeptide repeat-containing protein At3g29230 
 nta-r.1   107828262   pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like 
 nta-r.1   107829133   pentatricopeptide repeat-containing protein At2g20540 

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Top 50 coexpressed genes to 121229338 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121229338 (ghi-r.1 coexpression data)

CoexMap"121229338"


ghiLOC121229338 | Entrez gene ID : 121229338    
Species ghi ath bra cit gma vvi ppo mtr sly sot nta cre hvu bna tae bdi osa zma sbi
Paralog 2 1 1 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (557 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (14879 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040969336.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 2,  plas 2,  E.R. 2,  E.R._plas 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_040969336.1)
Subcellular
localization
TargetP
other 6  (predict for XP_040969336.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121229338
ghi-r.1
for
107906451
ath-u.5
for
AT1G13410
bra-r.6
for
103836103
cit-r.1
for
102619843
gma-u.5
for
100818133
vvi-u.5
for
100257772
ppo-u.5
for
7488362
mtr-u.5
for
25501384
sly-u.5
for
101246348
sot-r.1
for
102602917
nta-r.1
for
107828262
nta-r.1
for
107829133


Ortholog ID: 14059
Species ghi ghi ath bra cit gma vvi ppo mtr sly sot nta nta
Symbol LOC121229338 LOC107906451 AT1G13410 LOC103836103 LOC102619843 LOC100818133 LOC100257772 LOC7488362 LOC25501384 LOC101246348 LOC102602917 LOC107828262 LOC107829133
Function* pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At3g29230 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like pentatricopeptide repeat-containing protein At2g20540
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 6
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00480 Glutathione metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121229338 107906451 837901 103836103 102619843 100818133 100257772 7488362 25501384 101246348 102602917 107828262 107829133
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