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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107828262   pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like 
 sly-u.5   101246348   pentatricopeptide repeat-containing protein 
 ath-u.5   AT1G13410   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100818133   pentatricopeptide repeat-containing protein At3g29230 
 vvi-u.5   100257772   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 ppo-u.5   7488362   pentatricopeptide repeat-containing protein At3g29230 
 mtr-u.5   25501384   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 

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Top 50 coexpressed genes to 107828262 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107828262 (nta-r.1 coexpression data)

CoexMap"107828262"


ntaLOC107828262 | Entrez gene ID : 107828262      
Species nta sly ath gma vvi ppo mtr bdi hvu bra cit bna sbi ghi osa sot cre tae zma
Paralog 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (732 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (2607 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016511036.1 [sequence] [blastp]
XP_016511037.1 [sequence] [blastp]
XP_075104327.1 [sequence] [blastp]
XP_075104328.1 [sequence] [blastp]
XP_075104329.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  extr 2,  E.R. 1  (predict for XP_016511036.1)
cyto 6,  extr 2,  E.R. 1  (predict for XP_016511037.1)
cyto 6,  extr 2,  E.R. 1  (predict for XP_075104327.1)
cyto 6,  extr 2,  E.R. 1  (predict for XP_075104328.1)
cyto 6,  extr 2,  E.R. 1  (predict for XP_075104329.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016511036.1)
other 8  (predict for XP_016511037.1)
other 8  (predict for XP_075104327.1)
other 8  (predict for XP_075104328.1)
other 8  (predict for XP_075104329.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107828262
sly-u.5
for
101246348
ath-u.5
for
AT1G13410
gma-u.5
for
100818133
vvi-u.5
for
100257772
ppo-u.5
for
7488362
mtr-u.5
for
25501384


Ortholog ID: 14059
Species nta nta sly sot ath gma bra vvi ppo mtr ghi ghi cit
Symbol LOC107828262 LOC107829133 LOC101246348 LOC102602917 AT1G13410 LOC100818133 LOC103836103 LOC100257772 LOC7488362 LOC25501384 LOC121229338 LOC107906451 LOC102619843
Function* pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like pentatricopeptide repeat-containing protein At2g20540 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g29230 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At1g08070, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00480 Glutathione metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 6
ghi04075 Plant hormone signal transduction 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107828262 107829133 101246348 102602917 837901 100818133 103836103 100257772 7488362 25501384 121229338 107906451 102619843
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