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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25501384   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 mtr-r.5   25501384   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 gma-u.5   100818133   pentatricopeptide repeat-containing protein At3g29230 
 ppo-u.5   7488362   pentatricopeptide repeat-containing protein At3g29230 
 ath-u.5   AT1G13410   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100257772   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 sly-u.5   101246348   pentatricopeptide repeat-containing protein 

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Top 50 coexpressed genes to 25501384 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25501384 (mtr-u.5 coexpression data)

CoexMap"25501384"


mtrLOC25501384 | Entrez gene ID : 25501384    
Species mtr gma ppo ath vvi sly sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (432 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_024628523.1 [sequence] [blastp]
XP_024628524.1 [sequence] [blastp]
XP_024628531.1 [sequence] [blastp]
XP_039684795.1 [sequence] [blastp]
XP_039684796.1 [sequence] [blastp]
XP_039684798.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  cysk 1  (predict for XP_024628523.1)
cyto 9,  chlo 1,  cysk 1  (predict for XP_024628524.1)
cyto 9,  chlo 1,  cysk 1  (predict for XP_024628531.1)
cyto 9,  chlo 1,  cysk 1  (predict for XP_039684795.1)
cyto 9,  chlo 1,  cysk 1  (predict for XP_039684796.1)
cyto 9,  chlo 1,  cysk 1  (predict for XP_039684798.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for XP_024628523.1)
mito 4,  other 3  (predict for XP_024628524.1)
mito 4,  other 3  (predict for XP_024628531.1)
mito 4,  other 3  (predict for XP_039684795.1)
mito 4,  other 3  (predict for XP_039684796.1)
mito 4,  other 3  (predict for XP_039684798.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25501384

.
mtr-r.5
for
25501384

.
gma-u.5
for
100818133

.
ppo-u.5
for
7488362

.
ath-u.5
for
AT1G13410

.
vvi-u.5
for
100257772

.
sly-u.5
for
101246348

.


Ortholog ID: 14059
Species ath gma sly bra vvi ppo mtr ghi ghi sot cit nta nta
Symbol AT1G13410 LOC100818133 LOC101246348 LOC103836103 LOC100257772 LOC7488362 LOC25501384 LOC121229338 LOC107906451 LOC102602917 LOC102619843 LOC107828262 LOC107829133
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At3g29230 pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like pentatricopeptide repeat-containing protein At2g20540
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00480 Glutathione metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 6
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837901 100818133 101246348 103836103 100257772 7488362 25501384 121229338 107906451 102602917 102619843 107828262 107829133
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