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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106445878   THO complex subunit 4D 
 bna-r.1   106389530   THO complex subunit 4B 
 bna-r.1   106418343   THO complex subunit 4A 
 bra-r.6   103863747   THO complex subunit 4D 
 bra-r.6   103855473   THO complex subunit 4B 
 ath-u.5   AT5G02530   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   ALY4   ALWAYS EARLY 4 
 ath-u.5   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ghi-r.1   107938439   THO complex subunit 4A 
 ghi-r.1   107937016   THO complex subunit 4A 
 cit-r.1   102611313   THO complex subunit 4B-like 
 cit-r.1   102629336   THO complex subunit 4A 
 cit-r.1   102630056   THO complex subunit 4B-like 
 gma-u.5   100801491   THO complex subunit 4D 
 gma-u.5   100820344   THO complex subunit 4D 
 gma-u.5   100817317   THO complex subunit 4A 
 vvi-u.5   100257081   THO complex subunit 4A 
 vvi-u.5   100257009   THO complex subunit 4D 
 vvi-u.5   100258168   THO complex subunit 4B 
 ppo-u.5   7493558   THO complex subunit 4D 
 ppo-u.5   7489584   THO complex subunit 4A 
 ppo-u.5   7485720   THO complex subunit 4A 
 mtr-u.5   11406653   THO complex subunit 4D 
 mtr-u.5   11446087   THO complex subunit 4B 
 mtr-u.5   25492480   THO complex subunit 4A 
 sly-u.5   101256343   THO complex subunit 4D 
 sly-u.5   101262878   THO complex subunit 4A 
 sly-u.5   101266904   RNA-binding (RRM/RBD/RNP motifs) family protein 
 sot-r.1   102583179   THO complex subunit 4D 
 sot-r.1   102591640   THO complex subunit 4A-like 
 sot-r.1   102603961   THO complex subunit 4A-like 
 nta-r.1   107805467   THO complex subunit 4A 
 nta-r.1   107819595   THO complex subunit 4A 
 nta-r.1   107791454   THO complex subunit 4A-like 
 osa-u.5   4345621   THO complex subunit 4D 
 osa-u.5   4349526   THO complex subunit 4A 
 osa-u.5   4351236   THO complex subunit 4A 
 zma-u.5   100279524   THO complex subunit 4 
 zma-u.5   100280157   THO complex subunit 4C 
 zma-u.5   100280336   THO complex subunit 4 
 tae-r.2   123120594   THO complex subunit 4B 
 tae-r.2   123096711   THO complex subunit 4B 
 tae-r.2   123043365   THO complex subunit 4D 
 hvu-r.1   123407428   THO complex subunit 4D-like 
 hvu-r.1   123452129   THO complex subunit 4B-like 
 hvu-r.1   123449000   THO complex subunit 4A-like 
 sbi-r.1   8069134   THO complex subunit 4B 
 sbi-r.1   8084918   THO complex subunit 4A 
 sbi-r.1   8075639   THO complex subunit 4D 
 bdi-r.1   100823621   THO complex subunit 4A 
 bdi-r.1   100821328   THO complex subunit 4D 
 bdi-r.1   100828658   THO complex subunit 4A 
 cre-r.1   CHLRE_10g462250v5   uncharacterized protein 

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Top 50 coexpressed genes to 106445878 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106445878 (bna-r.1 coexpression data)

CoexMap"106445878"


bnaLOC106445878 | Entrez gene ID : 106445878    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03013 [list] [network] Nucleocytoplasmic transport (328 genes)
bna03015 [list] [network] mRNA surveillance pathway (420 genes)
bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0006406 [list] [network] mRNA export from nucleus  (92 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_013742973.2 [sequence] [blastp]
XP_022573760.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for XP_013742973.2)
nucl 7,  cyto 2  (predict for XP_022573760.2)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_013742973.2)
other 5,  chlo 3  (predict for XP_022573760.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106445878
bna-r.1
for
106389530
bna-r.1
for
106418343
bra-r.6
for
103863747
bra-r.6
for
103855473
ath-u.5
for
AT5G02530
ath-u.5
for
ALY4
ath-u.5
for
AT5G59950
ghi-r.1
for
107938439
ghi-r.1
for
107937016
cit-r.1
for
102611313
cit-r.1
for
102629336
cit-r.1
for
102630056
gma-u.5
for
100801491
gma-u.5
for
100820344
gma-u.5
for
100817317
vvi-u.5
for
100257081
vvi-u.5
for
100257009
vvi-u.5
for
100258168
ppo-u.5
for
7493558
ppo-u.5
for
7489584
ppo-u.5
for
7485720
mtr-u.5
for
11406653
mtr-u.5
for
11446087
mtr-u.5
for
25492480
sly-u.5
for
101256343
sly-u.5
for
101262878
sly-u.5
for
101266904
sot-r.1
for
102583179
sot-r.1
for
102591640
sot-r.1
for
102603961
nta-r.1
for
107805467
nta-r.1
for
107819595
nta-r.1
for
107791454
osa-u.5
for
4345621
osa-u.5
for
4349526
osa-u.5
for
4351236
zma-u.5
for
100279524
zma-u.5
for
100280157
zma-u.5
for
100280336
tae-r.2
for
123120594
tae-r.2
for
123096711
tae-r.2
for
123043365
hvu-r.1
for
123407428
hvu-r.1
for
123452129
hvu-r.1
for
123449000
sbi-r.1
for
8069134
sbi-r.1
for
8084918
sbi-r.1
for
8075639
bdi-r.1
for
100823621
bdi-r.1
for
100821328
bdi-r.1
for
100828658
cre-r.1
for
CHLRE_10g462250v5


Ortholog ID: 634
Species bna bna bna bra bra ath ath ath ghi ghi cit cit cit gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC106389530 LOC106412038 LOC106357788 LOC103845414 LOC103847441 AT5G02530 AT5G59950 AT1G66260 LOC107932446 LOC107937033 LOC102611313 LOC102630056 LOC102622377 LOC100783362 LOC100785926 LOC100257081 LOC100257009 LOC100258168 LOC7489584 LOC7485720 LOC18106636 LOC11406653 LOC11446087 LOC25492480 LOC101256343 LOC101262878 LOC101268859 LOC102583179 LOC102591640 LOC102593463 LOC107805467 LOC107784716 LOC107777581 LOC4345621 LOC4351236 LOC4342793 LOC100280157 LOC100280336 LOC100278324 LOC123091728 LOC123164949 LOC123156239 LOC123407428 LOC123448119 LOC123424545 LOC8069134 LOC8075639 LOC8061518 LOC100823621 LOC100841511 LOC100843825 CHLRE_10g462250v5
Function* THO complex subunit 4B THO complex subunit 4C-like THO complex subunit 4A-like THO complex subunit 4A THO complex subunit 4B RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein THO complex subunit 4A THO complex subunit 4D THO complex subunit 4B-like THO complex subunit 4B-like THO complex subunit 4D THO complex subunit 4A THO complex subunit 4B THO complex subunit 4A THO complex subunit 4D THO complex subunit 4B THO complex subunit 4A THO complex subunit 4A THO complex subunit 4D THO complex subunit 4D THO complex subunit 4B THO complex subunit 4A THO complex subunit 4D THO complex subunit 4A THO complex subunit 4D-like THO complex subunit 4D THO complex subunit 4A-like THO complex subunit 4D THO complex subunit 4A THO complex subunit 4D THO complex subunit 4A-like THO complex subunit 4D THO complex subunit 4A THO complex subunit 4A THO complex subunit 4C THO complex subunit 4 uncharacterized LOC100278324 THO complex subunit 4B THO complex subunit 4D THO complex subunit 4D THO complex subunit 4D-like THO complex subunit 4B-like THO complex subunit 4D-like THO complex subunit 4B THO complex subunit 4D THO complex subunit 4D THO complex subunit 4A THO complex subunit 4D THO complex subunit 4B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna00190 Oxidative phosphorylation 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
bna04626 Plant-pathogen interaction 7
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
bna00061 Fatty acid biosynthesis 3
bna00780 Biotin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 6
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath03015 mRNA surveillance pathway 2
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 12
ghi03013 Nucleocytoplasmic transport 10
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 10
ghi03040 Spliceosome 10
ghi03013 Nucleocytoplasmic transport 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03040 Spliceosome 3
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 3
cit04075 Plant hormone signal transduction 2
cit04626 Plant-pathogen interaction 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 7
gma03015 mRNA surveillance pathway 7
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi04712 Circadian rhythm - plant 2
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04814 Motor proteins 4
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 3
sly03013 Nucleocytoplasmic transport 2
sly03083 Polycomb repressive complex 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 5
nta03015 mRNA surveillance pathway 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 10
zma03015 mRNA surveillance pathway 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
tae04141 Protein processing in endoplasmic reticulum 8
tae04144 Endocytosis 8
tae03013 Nucleocytoplasmic transport 6
tae03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 10
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 5
tae04382 Cornified envelope formation 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 10
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 5
tae04382 Cornified envelope formation 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu04144 Endocytosis 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03083 Polycomb repressive complex 2
sbi03015 mRNA surveillance pathway 2
sbi03050 Proteasome 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 7
sbi03040 Spliceosome 6
sbi04382 Cornified envelope formation 3
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi04144 Endocytosis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 2
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 6
bdi03060 Protein export 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106389530 106412038 106357788 103845414 103847441 831923 836117 842943 107932446 107937033 102611313 102630056 102622377 100783362 100785926 100257081 100257009 100258168 7489584 7485720 18106636 11406653 11446087 25492480 101256343 101262878 101268859 102583179 102591640 102593463 107805467 107784716 107777581 4345621 4351236 4342793 100280157 100280336 100278324 123091728 123164949 123156239 123407428 123448119 123424545 8069134 8075639 8061518 100823621 100841511 100843825 5723978
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