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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100828658   THO complex subunit 4A 
 osa-u.5   4345621   THO complex subunit 4D 
 osa-u.5   4349526   THO complex subunit 4A 
 osa-u.5   4351236   THO complex subunit 4A 
 zma-u.5   100279524   THO complex subunit 4 
 zma-u.5   100280157   THO complex subunit 4C 
 zma-u.5   100280336   THO complex subunit 4 
 ath-u.5   AT5G02530   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   ALY4   ALWAYS EARLY 4 
 ath-u.5   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100801491   THO complex subunit 4D 
 gma-u.5   100820344   THO complex subunit 4D 
 gma-u.5   100817317   THO complex subunit 4A 
 sly-u.5   101256343   THO complex subunit 4D 
 sly-u.5   101262878   THO complex subunit 4A 
 sly-u.5   101266904   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100257009   THO complex subunit 4D 
 vvi-u.5   100258168   THO complex subunit 4B 
 vvi-u.5   100257081   THO complex subunit 4A 
 ppo-u.5   7493558   THO complex subunit 4D 
 ppo-u.5   7489584   THO complex subunit 4A 
 ppo-u.5   7485720   THO complex subunit 4A 
 mtr-u.5   11406653   THO complex subunit 4D 
 mtr-u.5   11446087   THO complex subunit 4B 
 mtr-u.5   25492480   THO complex subunit 4A 

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Top 50 coexpressed genes to 100828658 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100828658 (bdi-r.1 coexpression data)

CoexMap"100828658"


bdiLOC100828658 | Entrez gene ID : 100828658      
Species bdi osa zma ath gma sly vvi ppo mtr hvu bra cit bna sbi ghi sot nta cre tae
Paralog 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03013 [list] [network] Nucleocytoplasmic transport (114 genes)
bdi03015 [list] [network] mRNA surveillance pathway (130 genes)
bdi03040 [list] [network] Spliceosome (282 genes)
GO BP
GO:0006406 [list] [network] mRNA export from nucleus  (33 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2880 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (271 genes)  IEA  
Protein XP_003561774.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_003561774.2)
Subcellular
localization
TargetP
other 7,  chlo 5  (predict for XP_003561774.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100828658
osa-u.5
for
4345621
osa-u.5
for
4349526
osa-u.5
for
4351236
zma-u.5
for
100279524
zma-u.5
for
100280157
zma-u.5
for
100280336
ath-u.5
for
AT5G02530
ath-u.5
for
ALY4
ath-u.5
for
AT5G59950
gma-u.5
for
100801491
gma-u.5
for
100820344
gma-u.5
for
100817317
sly-u.5
for
101256343
sly-u.5
for
101262878
sly-u.5
for
101266904
vvi-u.5
for
100257009
vvi-u.5
for
100258168
vvi-u.5
for
100257081
ppo-u.5
for
7493558
ppo-u.5
for
7489584
ppo-u.5
for
7485720
mtr-u.5
for
11406653
mtr-u.5
for
11446087
mtr-u.5
for
25492480


Ortholog ID: 634
Species bdi bdi tae tae hvu hvu osa osa zma zma sbi sbi ath ath gma gma sly sly bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot sot cit cit nta nta cre
Symbol LOC100841511 LOC100843825 LOC123156239 LOC123091728 LOC123424545 LOC123448119 LOC4351236 LOC4342793 LOC100280336 LOC100278324 LOC8069134 LOC8061518 AT5G59950 AT5G02530 LOC100783362 LOC100785926 LOC101262878 LOC101268859 LOC103847441 LOC100257081 LOC100258168 LOC18106636 LOC7485720 LOC25492480 LOC11406653 LOC107937033 LOC107932446 LOC106412038 LOC106389530 LOC102583179 LOC102591640 LOC102611313 LOC102630056 LOC107784716 LOC107805467 CHLRE_10g462250v5
Function* THO complex subunit 4D THO complex subunit 4B THO complex subunit 4D THO complex subunit 4B THO complex subunit 4D-like THO complex subunit 4B-like THO complex subunit 4A THO complex subunit 4A THO complex subunit 4 uncharacterized LOC100278324 THO complex subunit 4B THO complex subunit 4D RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein THO complex subunit 4A THO complex subunit 4B THO complex subunit 4A THO complex subunit 4D-like THO complex subunit 4B THO complex subunit 4A THO complex subunit 4B THO complex subunit 4D THO complex subunit 4A THO complex subunit 4A THO complex subunit 4D THO complex subunit 4D THO complex subunit 4A THO complex subunit 4C-like THO complex subunit 4B THO complex subunit 4D THO complex subunit 4A-like THO complex subunit 4B-like THO complex subunit 4B-like THO complex subunit 4D THO complex subunit 4A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 2
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 6
bdi03060 Protein export 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 10
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 5
tae04382 Cornified envelope formation 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
tae04141 Protein processing in endoplasmic reticulum 8
tae04144 Endocytosis 8
tae03013 Nucleocytoplasmic transport 6
tae03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03083 Polycomb repressive complex 2
sbi03015 mRNA surveillance pathway 2
sbi03050 Proteasome 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi04144 Endocytosis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 6
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 7
gma03015 mRNA surveillance pathway 7
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 3
sly03013 Nucleocytoplasmic transport 2
sly03083 Polycomb repressive complex 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04814 Motor proteins 4
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 10
ghi03040 Spliceosome 10
ghi03013 Nucleocytoplasmic transport 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 12
ghi03013 Nucleocytoplasmic transport 10
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
bna04626 Plant-pathogen interaction 7
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna00190 Oxidative phosphorylation 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03040 Spliceosome 3
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 5
nta03015 mRNA surveillance pathway 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100841511 100843825 123156239 123091728 123424545 123448119 4351236 4342793 100280336 100278324 8069134 8061518 836117 831923 100783362 100785926 101262878 101268859 103847441 100257081 100258168 18106636 7485720 25492480 11406653 107937033 107932446 106412038 106389530 102583179 102591640 102611313 102630056 107784716 107805467 5723978
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