ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100257009	THO complex subunit 4D
vvi-r.5	100257009	THO complex subunit 4D
vvi-u.5	100258168	THO complex subunit 4B
vvi-u.5	100257081	THO complex subunit 4A
ath-u.5	AT5G02530	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	ALY4	ALWAYS EARLY 4
ath-u.5	AT5G59950	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100801491	THO complex subunit 4D
gma-u.5	100820344	THO complex subunit 4D
gma-u.5	100817317	THO complex subunit 4A
ppo-u.5	7493558	THO complex subunit 4D
ppo-u.5	7489584	THO complex subunit 4A
ppo-u.5	7485720	THO complex subunit 4A
mtr-u.5	11406653	THO complex subunit 4D
mtr-u.5	11446087	THO complex subunit 4B
mtr-u.5	25492480	THO complex subunit 4A
sly-u.5	101256343	THO complex subunit 4D
sly-u.5	101262878	THO complex subunit 4A
sly-u.5	101266904	RNA-binding (RRM/RBD/RNP motifs) family protein
osa-u.5	4349526	THO complex subunit 4A
osa-u.5	4345621	THO complex subunit 4D
osa-u.5	4351236	THO complex subunit 4A
zma-u.5	100279524	THO complex subunit 4
zma-u.5	100280157	THO complex subunit 4C
zma-u.5	100280336	THO complex subunit 4

Top 50 coexpressed genes to 100257009 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100257009 (vvi-u.5 coexpression data)

CoexMap"100257009"

[Cytoscape]

Annotation

functional annotation

KEGG

vvi03013 [list] [network] Nucleocytoplasmic transport (98 genes)

vvi03015 [list] [network] mRNA surveillance pathway (113 genes)

vvi03040 [list] [network] Spliceosome (236 genes)

GO BP

GO:0006406 [list] [network] mRNA export from nucleus

(35 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2597 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(233 genes)

IEA

Protein

XP_002276497.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_002276497.1)

Subcellular
localization
TargetP

chlo 7, other 5

(predict for XP_002276497.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100257009	vvi-r.5 for 100257009	vvi-u.5 for 100258168	vvi-u.5 for 100257081	ath-u.5 for AT5G02530	ath-u.5 for ALY4	ath-u.5 for AT5G59950	gma-u.5 for 100801491	gma-u.5 for 100820344	gma-u.5 for 100817317	ppo-u.5 for 7493558	ppo-u.5 for 7489584	ppo-u.5 for 7485720	mtr-u.5 for 11406653	mtr-u.5 for 11446087	mtr-u.5 for 25492480	sly-u.5 for 101256343	sly-u.5 for 101262878	sly-u.5 for 101266904	osa-u.5 for 4349526	osa-u.5 for 4345621	osa-u.5 for 4351236	zma-u.5 for 100279524	zma-u.5 for 100280157	zma-u.5 for 100280336

Ortholog

Ortholog ID: 634

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

THO complex subunit 4A

THO complex subunit 4B

RNA-binding (RRM/RBD/RNP motifs) family protein

THO complex subunit 4A

THO complex subunit 4B

THO complex subunit 4D

THO complex subunit 4A

THO complex subunit 4D

THO complex subunit 4A

THO complex subunit 4C-like

THO complex subunit 4B

THO complex subunit 4B-like

THO complex subunit 4A

THO complex subunit 4D-like

THO complex subunit 4D

THO complex subunit 4A-like

THO complex subunit 4D

THO complex subunit 4A

THO complex subunit 4

uncharacterized LOC100278324

THO complex subunit 4D

THO complex subunit 4B

THO complex subunit 4D-like

THO complex subunit 4B-like

THO complex subunit 4B

THO complex subunit 4D

THO complex subunit 4B

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	4
vvi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	6
ath03040	Spliceosome	6
ath03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	7
gma03015	mRNA surveillance pathway	7
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo03013	Nucleocytoplasmic transport	3
ppo03015	mRNA surveillance pathway	3
ppo03040	Spliceosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	10
ghi03040	Spliceosome	10
ghi03013	Nucleocytoplasmic transport	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	12
ghi03013	Nucleocytoplasmic transport	10
ghi03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	7
bna04626	Plant-pathogen interaction	7
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	5
bna00190	Oxidative phosphorylation	4
bna03015	mRNA surveillance pathway	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	4
cit03040	Spliceosome	3
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	4
sly04141	Protein processing in endoplasmic reticulum	3
sly03013	Nucleocytoplasmic transport	2
sly03083	Polycomb repressive complex	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	7
sly03015	mRNA surveillance pathway	4
sly03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta03013	Nucleocytoplasmic transport	5
nta03015	mRNA surveillance pathway	3
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03013	Nucleocytoplasmic transport	3
osa03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma03013	Nucleocytoplasmic transport	4
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	10
tae03013	Nucleocytoplasmic transport	5
tae03040	Spliceosome	5
tae04382	Cornified envelope formation	3
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	14
tae04141	Protein processing in endoplasmic reticulum	8
tae04144	Endocytosis	8
tae03013	Nucleocytoplasmic transport	6
tae03015	mRNA surveillance pathway	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	3
sbi03083	Polycomb repressive complex	2
sbi03015	mRNA surveillance pathway	2
sbi03050	Proteasome	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	2
sbi04144	Endocytosis	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2
bdi03013	Nucleocytoplasmic transport	2
bdi03040	Spliceosome	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	6
bdi03060	Protein export	2
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	7
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

100257081

100258168

836117

831923

100783362

100785926

103847441

18106636

7485720

25492480

11406653

107937033

107932446

106412038

106389530

102611313

102630056

101262878

101268859

102583179

102591640

107784716

107805467

4351236

4342793

100280336

100278324

123156239

123091728

123424545

123448119

8069134

8061518

100841511

100843825

5723978

The preparation time of this page was 0.1 [sec].


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100257009 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100257009 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**