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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   RPA1A   replication protein A 1A 
 ath-u.5   RPA1A   replication protein A 1A 
 ath-r.7   RPA1A   replication protein A 1A 
 ath-m.9   RPA1A   replication protein A 1A 
 ath-e.2   RPA1A   replication protein A 1A 
 ath-m.4.bio   RPA1A   replication protein A 1A 
 ath-m.4.hor   RPA1A   replication protein A 1A 
 ath-m.4.str   RPA1A   replication protein A 1A 
 ath-m.4.tis   RPA1A   replication protein A 1A 
 ath-u.5   AT4G19130   Replication factor-A protein 1-like protein 
 ath-u.5   RPA70C   Replication factor-A protein 1-like protein 
 bra-r.6   103839661   replication protein A 70 kDa DNA-binding subunit C-like 
 bra-r.6   103853634   replication protein A 70 kDa DNA-binding subunit C 
 bra-r.6   103861037   replication protein A 70 kDa DNA-binding subunit E 
 bna-r.1   111214264   replication protein A 70 kDa DNA-binding subunit E-like 
 bna-r.1   111209923   replication protein A 70 kDa DNA-binding subunit C-like 
 bna-r.1   125607123   replication protein A 70 kDa DNA-binding subunit E-like 
 ghi-r.1   107932071   replication protein A 70 kDa DNA-binding subunit A 
 ghi-r.1   107946806   replication protein A 70 kDa DNA-binding subunit C 
 ghi-r.1   107947368   replication protein A 70 kDa DNA-binding subunit E 
 cit-r.1   102611437   replication protein A 70 kDa DNA-binding subunit A 
 cit-r.1   102626079   replication protein A 70 kDa DNA-binding subunit A 
 gma-u.5   100778597   replication protein A 70 kDa DNA-binding subunit A 
 gma-u.5   100792409   replication protein A 70 kDa DNA-binding subunit A 
 vvi-u.5   100263039   replication protein A 70 kDa DNA-binding subunit A 
 vvi-u.5   100268119   replication protein A 70 kDa DNA-binding subunit A 
 ppo-u.5   7491902   replication protein A 70 kDa DNA-binding subunit E 
 ppo-u.5   18107702   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   112421905   replication protein A 70 kDa DNA-binding subunit E 
 mtr-u.5   11407150   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   25486480   replication protein A 70 kDa DNA-binding subunit A 
 sly-u.5   101250913   replication protein A 70 kDa DNA-binding subunit A-like 
 sly-u.5   101259439   replication protein A 70 kDa DNA-binding subunit A 
 sot-r.1   102580048   replication protein A 70 kDa DNA-binding subunit A 
 sot-r.1   102585520   replication protein A 70 kDa DNA-binding subunit A 
 nta-r.1   107779033   replication protein A 70 kDa DNA-binding subunit A-like 
 nta-r.1   107764144   replication protein A 70 kDa DNA-binding subunit A-like 
 nta-r.1   107815417   replication protein A 70 kDa DNA-binding subunit A 
 osa-u.5   4330902   replication protein A 70 kDa DNA-binding subunit A-like 
 osa-u.5   4337594   replication protein A 70 kDa DNA-binding subunit C-like 
 zma-u.5   100285427   uncharacterized LOC100285427 
 zma-u.5   100383373   Replication protein A 70 kDa DNA-binding subunit A 
 tae-r.2   123180384   replication protein A 70 kDa DNA-binding subunit C 
 tae-r.2   123145722   replication protein A 70 kDa DNA-binding subunit A 
 tae-r.2   123104475   replication protein A 70 kDa DNA-binding subunit C 
 hvu-r.1   123401853   replication protein A 70 kDa DNA-binding subunit A-like 
 hvu-r.1   123424396   replication protein A 70 kDa DNA-binding subunit C-like 
 hvu-r.1   123443121   replication protein A 70 kDa DNA-binding subunit C-like 
 sbi-r.1   8056064   replication protein A 70 kDa DNA-binding subunit C 
 sbi-r.1   8068670   replication protein A 70 kDa DNA-binding subunit C 
 bdi-r.1   100835357   replication protein A 70 kDa DNA-binding subunit A-like 
 bdi-r.1   100846917   replication protein A 70 kDa DNA-binding subunit C 
 bdi-r.1   100846308   replication protein A 70 kDa DNA-binding subunit A 
 cre-r.1   CHLRE_17g718850v5   uncharacterized protein 

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Top 50 coexpressed genes to RPA1A (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RPA1A (ath-m.4.lig coexpression data)

CoexMap"815209"


athRPA1A | Entrez gene ID : 815209      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 2 2 2 3 2 2 3 2 2 3 3 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03030 [list] [network] DNA replication (43 genes)
ath03420 [list] [network] Nucleotide excision repair (85 genes)
ath03430 [list] [network] Mismatch repair (32 genes)
ath03440 [list] [network] Homologous recombination (60 genes)
ath03460 [list] [network] Fanconi anemia pathway (46 genes)
GO BP
GO:0007141 [list] [network] male meiosis I  (1 genes)  IMP  
GO:0051026 [list] [network] chiasma assembly  (16 genes)  IMP  
GO:0007131 [list] [network] reciprocal meiotic recombination  (44 genes)  IGI  
GO:0048232 [list] [network] male gamete generation  (70 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0000785 [list] [network] chromatin  (140 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_178690.1 [sequence] [blastp]
NP_973433.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  chlo 1,  extr 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_178690.1)
nucl 5,  cyto 4  (predict for NP_973433.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_178690.1)
mito 7,  other 5  (predict for NP_973433.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
RPA1A
ath-u.5
for
RPA1A
ath-r.7
for
RPA1A
ath-m.9
for
RPA1A
ath-e.2
for
RPA1A
ath-m.4.bio
for
RPA1A
ath-m.4.hor
for
RPA1A
ath-m.4.str
for
RPA1A
ath-m.4.tis
for
RPA1A
ath-u.5
for
AT4G19130
ath-u.5
for
RPA70C
bra-r.6
for
103839661
bra-r.6
for
103853634
bra-r.6
for
103861037
bna-r.1
for
111214264
bna-r.1
for
111209923
bna-r.1
for
125607123
ghi-r.1
for
107932071
ghi-r.1
for
107946806
ghi-r.1
for
107947368
cit-r.1
for
102611437
cit-r.1
for
102626079
gma-u.5
for
100778597
gma-u.5
for
100792409
vvi-u.5
for
100263039
vvi-u.5
for
100268119
ppo-u.5
for
7491902
ppo-u.5
for
18107702
mtr-u.5
for
112421905
mtr-u.5
for
11407150
mtr-u.5
for
25486480
sly-u.5
for
101250913
sly-u.5
for
101259439
sot-r.1
for
102580048
sot-r.1
for
102585520
nta-r.1
for
107779033
nta-r.1
for
107764144
nta-r.1
for
107815417
osa-u.5
for
4330902
osa-u.5
for
4337594
zma-u.5
for
100285427
zma-u.5
for
100383373
tae-r.2
for
123180384
tae-r.2
for
123145722
tae-r.2
for
123104475
hvu-r.1
for
123401853
hvu-r.1
for
123424396
hvu-r.1
for
123443121
sbi-r.1
for
8056064
sbi-r.1
for
8068670
bdi-r.1
for
100835357
bdi-r.1
for
100846917
bdi-r.1
for
100846308
cre-r.1
for
CHLRE_17g718850v5


Ortholog ID: 2122
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol RPA1A AT4G19130 RPA70C LOC103853634 LOC103861037 LOC103828494 LOC106366739 LOC106381668 LOC106381720 LOC107946806 LOC107947368 LOC107893353 LOC102611437 LOC102626079 LOC100778597 LOC100792409 LOC100263039 LOC100268119 LOC7491902 LOC18107702 LOC112421905 LOC11407150 LOC25486480 LOC101250913 LOC101259439 LOC102580048 LOC102585520 LOC107779033 LOC107764144 LOC107831305 LOC4330902 LOC4337594 LOC100285427 LOC100383373 LOC123128602 LOC123172141 LOC123186983 LOC123401853 LOC123424396 LOC123443121 LOC8056064 LOC8081933 LOC110430237 LOC100835357 LOC100846917 LOC100846308 CHLRE_17g718850v5
Function* replication protein A 1A Replication factor-A protein 1-like protein Replication factor-A protein 1-like protein replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C-like uncharacterized LOC100285427 Replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 5
ath03030 DNA replication 4
ath03420 Nucleotide excision repair 3
ath03460 Fanconi anemia pathway 3
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 6
ath03460 Fanconi anemia pathway 5
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03082 ATP-dependent chromatin remodeling 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 3
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 4
vvi03030 DNA replication 3
vvi03420 Nucleotide excision repair 3
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03420 Nucleotide excision repair 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot03420 Nucleotide excision repair 3
sot03410 Base excision repair 2
sot03430 Mismatch repair 2
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 5
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 5
osa03030 DNA replication 2
osa03420 Nucleotide excision repair 2
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 10
zma03420 Nucleotide excision repair 3
zma03430 Mismatch repair 3
zma03440 Homologous recombination 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03460 Fanconi anemia pathway 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 3
cre03440 Homologous recombination 2
cre03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815209 827651 834576 103853634 103861037 103828494 106366739 106381668 106381720 107946806 107947368 107893353 102611437 102626079 100778597 100792409 100263039 100268119 7491902 18107702 112421905 11407150 25486480 101250913 101259439 102580048 102585520 107779033 107764144 107831305 4330902 4337594 100285427 100383373 123128602 123172141 123186983 123401853 123424396 123443121 8056064 8081933 110430237 100835357 100846917 100846308 5729312
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