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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7491902   replication protein A 70 kDa DNA-binding subunit E 
 ppo-r.4   7491902   replication protein A 70 kDa DNA-binding subunit E 
 ppo-m.4   7491902   replication protein A 70 kDa DNA-binding subunit E 
 ppo-u.5   18107702   replication protein A 70 kDa DNA-binding subunit A 
 gma-u.5   100778597   replication protein A 70 kDa DNA-binding subunit A 
 gma-u.5   100792409   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   112421905   replication protein A 70 kDa DNA-binding subunit E 
 mtr-u.5   11407150   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   25486480   replication protein A 70 kDa DNA-binding subunit A 
 ath-u.5   RPA1A   replication protein A 1A 
 ath-u.5   AT4G19130   Replication factor-A protein 1-like protein 
 ath-u.5   RPA70C   Replication factor-A protein 1-like protein 
 vvi-u.5   100268119   replication protein A 70 kDa DNA-binding subunit A 
 vvi-u.5   100263039   replication protein A 70 kDa DNA-binding subunit A 
 sly-u.5   101250913   replication protein A 70 kDa DNA-binding subunit A-like 
 sly-u.5   101259439   replication protein A 70 kDa DNA-binding subunit A 
 osa-u.5   4330902   replication protein A 70 kDa DNA-binding subunit A-like 
 osa-u.5   4337594   replication protein A 70 kDa DNA-binding subunit C-like 
 zma-u.5   100285427   uncharacterized LOC100285427 
 zma-u.5   100383373   Replication protein A 70 kDa DNA-binding subunit A 

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Top 50 coexpressed genes to 7491902 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7491902 (ppo-u.5 coexpression data)

CoexMap"7491902"


ppoLOC7491902 | Entrez gene ID : 7491902    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 3 3 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03030 [list] [network] DNA replication (51 genes)
pop03420 [list] [network] Nucleotide excision repair (89 genes)
pop03430 [list] [network] Mismatch repair (40 genes)
pop03440 [list] [network] Homologous recombination (53 genes)
pop03460 [list] [network] Fanconi anemia pathway (47 genes)
GO BP
GO:0007004 [list] [network] telomere maintenance via telomerase  (6 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (41 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (74 genes)  IEA  
GO:0051321 [list] [network] meiotic cell cycle  (90 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (144 genes)  IEA  
GO CC
GO:0005662 [list] [network] DNA replication factor A complex  (8 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0043047 [list] [network] single-stranded telomeric DNA binding  (5 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (35 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
Protein XP_002304377.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  vacu 2,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_002304377.2)
Subcellular
localization
TargetP
other 7  (predict for XP_002304377.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7491902

.
ppo-r.4
for
7491902

.
ppo-m.4
for
7491902

.
ppo-u.5
for
18107702

.
gma-u.5
for
100778597

.
gma-u.5
for
100792409

.
mtr-u.5
for
112421905

.
mtr-u.5
for
11407150

.
mtr-u.5
for
25486480

.
ath-u.5
for
RPA1A

.
ath-u.5
for
AT4G19130

.
ath-u.5
for
RPA70C

.
vvi-u.5
for
100268119

.
vvi-u.5
for
100263039

.
sly-u.5
for
101250913

.
sly-u.5
for
101259439

.
osa-u.5
for
4330902

.
osa-u.5
for
4337594

.
zma-u.5
for
100285427

.
zma-u.5
for
100383373

.


Ortholog ID: 2122
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT4G19130 RPA70C LOC100792409 LOC100778597 LOC101250913 LOC101259439 LOC4330902 LOC4337594 LOC100383373 LOC100285427 LOC103828494 LOC103861037 LOC100268119 LOC100263039 LOC18107702 LOC7491902 LOC112421905 LOC11407150 LOC123128602 LOC123186983 LOC123401853 LOC123424396 LOC107946806 LOC107947368 LOC106366739 LOC106381668 CHLRE_17g718850v5 LOC8056064 LOC8081933 LOC102580048 LOC102585520 LOC102626079 LOC102611437 LOC100835357 LOC100846917 LOC107831305 LOC107764144
Function* Replication factor-A protein 1-like protein Replication factor-A protein 1-like protein replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C-like Replication protein A 70 kDa DNA-binding subunit A uncharacterized LOC100285427 replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C uncharacterized protein replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 5
ath03030 DNA replication 4
ath03420 Nucleotide excision repair 3
ath03460 Fanconi anemia pathway 3
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 6
ath03460 Fanconi anemia pathway 5
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 3
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 5
osa03030 DNA replication 2
osa03420 Nucleotide excision repair 2
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 10
zma03420 Nucleotide excision repair 3
zma03430 Mismatch repair 3
zma03440 Homologous recombination 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03082 ATP-dependent chromatin remodeling 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 4
vvi03030 DNA replication 3
vvi03420 Nucleotide excision repair 3
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 3
cre03440 Homologous recombination 2
cre03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot03420 Nucleotide excision repair 3
sot03410 Base excision repair 2
sot03430 Mismatch repair 2
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 5
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827651 834576 100792409 100778597 101250913 101259439 4330902 4337594 100383373 100285427 103828494 103861037 100268119 100263039 18107702 7491902 112421905 11407150 123128602 123186983 123401853 123424396 107946806 107947368 106366739 106381668 5729312 8056064 8081933 102580048 102585520 102626079 102611437 100835357 100846917 107831305 107764144
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