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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123443121   replication protein A 70 kDa DNA-binding subunit C-like 
 hvu-r.1   123424396   replication protein A 70 kDa DNA-binding subunit C-like 
 hvu-r.1   123401853   replication protein A 70 kDa DNA-binding subunit A-like 
 tae-r.2   123128602   replication protein A 70 kDa DNA-binding subunit A 
 tae-r.2   123111083   replication protein A 70 kDa DNA-binding subunit C 
 tae-r.2   123145722   replication protein A 70 kDa DNA-binding subunit A 
 bdi-r.1   100846308   replication protein A 70 kDa DNA-binding subunit A 
 bdi-r.1   100835357   replication protein A 70 kDa DNA-binding subunit A-like 
 bdi-r.1   100846917   replication protein A 70 kDa DNA-binding subunit C 
 osa-u.5   4337594   replication protein A 70 kDa DNA-binding subunit C-like 
 osa-u.5   4330902   replication protein A 70 kDa DNA-binding subunit A-like 
 zma-u.5   100383373   Replication protein A 70 kDa DNA-binding subunit A 
 zma-u.5   100285427   uncharacterized LOC100285427 
 sbi-r.1   110430237   replication protein A 70 kDa DNA-binding subunit C-like 
 sbi-r.1   8068670   replication protein A 70 kDa DNA-binding subunit C 
 sbi-r.1   8081933   replication protein A 70 kDa DNA-binding subunit A 
 ath-u.5   RPA1A   replication protein A 1A 
 ath-u.5   AT4G19130   Replication factor-A protein 1-like protein 
 ath-u.5   RPA70C   Replication factor-A protein 1-like protein 
 gma-u.5   100792409   replication protein A 70 kDa DNA-binding subunit A 
 gma-u.5   100778597   replication protein A 70 kDa DNA-binding subunit A 
 sly-u.5   101250913   replication protein A 70 kDa DNA-binding subunit A-like 
 sly-u.5   101259439   replication protein A 70 kDa DNA-binding subunit A 
 bra-r.6   103828494   replication protein A 70 kDa DNA-binding subunit A 
 bra-r.6   103839661   replication protein A 70 kDa DNA-binding subunit C-like 
 bra-r.6   103861037   replication protein A 70 kDa DNA-binding subunit E 
 vvi-u.5   100268119   replication protein A 70 kDa DNA-binding subunit A 
 vvi-u.5   100263039   replication protein A 70 kDa DNA-binding subunit A 
 ppo-u.5   18107702   replication protein A 70 kDa DNA-binding subunit A 
 ppo-u.5   7491902   replication protein A 70 kDa DNA-binding subunit E 
 mtr-u.5   25486480   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   11407150   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   112421905   replication protein A 70 kDa DNA-binding subunit E 
 ghi-r.1   107932071   replication protein A 70 kDa DNA-binding subunit A 
 ghi-r.1   107946806   replication protein A 70 kDa DNA-binding subunit C 
 ghi-r.1   107893353   replication protein A 70 kDa DNA-binding subunit A 
 bna-r.1   111209923   replication protein A 70 kDa DNA-binding subunit C-like 
 bna-r.1   111214264   replication protein A 70 kDa DNA-binding subunit E-like 
 bna-r.1   125607123   replication protein A 70 kDa DNA-binding subunit E-like 
 sot-r.1   102585520   replication protein A 70 kDa DNA-binding subunit A 
 sot-r.1   102580048   replication protein A 70 kDa DNA-binding subunit A 
 cit-r.1   102626079   replication protein A 70 kDa DNA-binding subunit A 
 cit-r.1   102611437   replication protein A 70 kDa DNA-binding subunit A 
 nta-r.1   107831305   replication protein A 70 kDa DNA-binding subunit A-like 
 nta-r.1   107764144   replication protein A 70 kDa DNA-binding subunit A-like 
 nta-r.1   107779033   replication protein A 70 kDa DNA-binding subunit A-like 
 cre-r.1   CHLRE_17g718850v5   uncharacterized protein 

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Top 50 coexpressed genes to 123443121 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123443121 (hvu-r.1 coexpression data)

CoexMap"123443121"


hvuLOC123443121 | Entrez gene ID : 123443121    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 3 3 2 2 3 3 2 2 3 2 2 3 3 3 2 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg03030 [list] [network] DNA replication (49 genes)
hvg03420 [list] [network] Nucleotide excision repair (92 genes)
hvg03430 [list] [network] Mismatch repair (38 genes)
hvg03440 [list] [network] Homologous recombination (64 genes)
hvg03460 [list] [network] Fanconi anemia pathway (51 genes)
GO BP
GO:0007004 [list] [network] telomere maintenance via telomerase  (9 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (49 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (92 genes)  IEA  
GO:0051321 [list] [network] meiotic cell cycle  (100 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (136 genes)  IEA  
GO CC
GO:0005662 [list] [network] DNA replication factor A complex  (15 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3241 genes)  IEA  
GO MF
GO:0043047 [list] [network] single-stranded telomeric DNA binding  (8 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (40 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (708 genes)  IEA  
Protein XP_044975365.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1  (predict for XP_044975365.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044975365.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123443121
hvu-r.1
for
123424396
hvu-r.1
for
123401853
tae-r.2
for
123128602
tae-r.2
for
123111083
tae-r.2
for
123145722
bdi-r.1
for
100846308
bdi-r.1
for
100835357
bdi-r.1
for
100846917
osa-u.5
for
4337594
osa-u.5
for
4330902
zma-u.5
for
100383373
zma-u.5
for
100285427
sbi-r.1
for
110430237
sbi-r.1
for
8068670
sbi-r.1
for
8081933
ath-u.5
for
RPA1A
ath-u.5
for
AT4G19130
ath-u.5
for
RPA70C
gma-u.5
for
100792409
gma-u.5
for
100778597
sly-u.5
for
101250913
sly-u.5
for
101259439
bra-r.6
for
103828494
bra-r.6
for
103839661
bra-r.6
for
103861037
vvi-u.5
for
100268119
vvi-u.5
for
100263039
ppo-u.5
for
18107702
ppo-u.5
for
7491902
mtr-u.5
for
25486480
mtr-u.5
for
11407150
mtr-u.5
for
112421905
ghi-r.1
for
107932071
ghi-r.1
for
107946806
ghi-r.1
for
107893353
bna-r.1
for
111209923
bna-r.1
for
111214264
bna-r.1
for
125607123
sot-r.1
for
102585520
sot-r.1
for
102580048
cit-r.1
for
102626079
cit-r.1
for
102611437
nta-r.1
for
107831305
nta-r.1
for
107764144
nta-r.1
for
107779033
cre-r.1
for
CHLRE_17g718850v5


Ortholog ID: 2122
Species hvu hvu hvu tae tae tae bdi bdi bdi osa osa zma zma sbi sbi sbi ath ath ath gma gma sly sly bra bra bra vvi vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta cre
Symbol LOC123443121 LOC123424396 LOC123401853 LOC123128602 LOC123186983 LOC123172141 LOC100846308 LOC100835357 LOC100846917 LOC4337594 LOC4330902 LOC100383373 LOC100285427 LOC110430237 LOC8081933 LOC8056064 RPA1A AT4G19130 RPA70C LOC100792409 LOC100778597 LOC101250913 LOC101259439 LOC103828494 LOC103861037 LOC103853634 LOC100268119 LOC100263039 LOC18107702 LOC7491902 LOC25486480 LOC11407150 LOC112421905 LOC107946806 LOC107893353 LOC107947368 LOC106366739 LOC106381668 LOC106381720 LOC102585520 LOC102580048 LOC102626079 LOC102611437 LOC107831305 LOC107764144 LOC107779033 CHLRE_17g718850v5
Function* replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit A-like Replication protein A 70 kDa DNA-binding subunit A uncharacterized LOC100285427 replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit C replication protein A 1A Replication factor-A protein 1-like protein Replication factor-A protein 1-like protein replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 5
osa03030 DNA replication 2
osa03420 Nucleotide excision repair 2
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 10
zma03420 Nucleotide excision repair 3
zma03430 Mismatch repair 3
zma03440 Homologous recombination 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03460 Fanconi anemia pathway 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 5
ath03030 DNA replication 4
ath03420 Nucleotide excision repair 3
ath03460 Fanconi anemia pathway 3
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 6
ath03460 Fanconi anemia pathway 5
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 3
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03082 ATP-dependent chromatin remodeling 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 4
vvi03030 DNA replication 3
vvi03420 Nucleotide excision repair 3
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03420 Nucleotide excision repair 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot03420 Nucleotide excision repair 3
sot03410 Base excision repair 2
sot03430 Mismatch repair 2
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 5
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 3
cre03440 Homologous recombination 2
cre03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123443121 123424396 123401853 123128602 123186983 123172141 100846308 100835357 100846917 4337594 4330902 100383373 100285427 110430237 8081933 8056064 815209 827651 834576 100792409 100778597 101250913 101259439 103828494 103861037 103853634 100268119 100263039 18107702 7491902 25486480 11407150 112421905 107946806 107893353 107947368 106366739 106381668 106381720 102585520 102580048 102626079 102611437 107831305 107764144 107779033 5729312
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