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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   CCD7   carotenoid cleavage dioxygenase 7 
 ath-m.9   CCD7   carotenoid cleavage dioxygenase 7 
 ath-m.4.bio   CCD7   carotenoid cleavage dioxygenase 7 
 ath-m.4.hor   CCD7   carotenoid cleavage dioxygenase 7 
 ath-m.4.str   CCD7   carotenoid cleavage dioxygenase 7 
 ath-m.4.tis   CCD7   carotenoid cleavage dioxygenase 7 
 ghi-r.1   107945551   carotenoid cleavage dioxygenase 7, chloroplastic 
 ghi-r.1   107923980   carotenoid cleavage dioxygenase 7, chloroplastic 
 vvi-u.5   100242750   carotenoid cleavage dioxygenase 7, chloroplastic 
 ppo-u.5   18105151   carotenoid cleavage dioxygenase 7, chloroplastic 
 mtr-u.5   11438975   carotenoid cleavage dioxygenase 7, chloroplastic 
 nta-r.1   107767822   carotenoid cleavage dioxygenase 7, chloroplastic-like 
 nta-r.1   107771847   carotenoid cleavage dioxygenase 7, chloroplastic-like 
 osa-u.5   4336591   carotenoid cleavage dioxygenase 7, chloroplastic-like 
 zma-u.5   100502521   uncharacterized LOC100502521 
 hvu-r.1   123427568   carotenoid cleavage dioxygenase 7, chloroplastic 
 sbi-r.1   8055963   carotenoid cleavage dioxygenase 7, chloroplastic 

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Top 50 coexpressed genes to CCD7 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CCD7 (ath-m.4.lig coexpression data)

CoexMap"819107"


athCCD7 | Entrez gene ID : 819107      
Species ath ghi vvi ppo mtr nta osa zma hvu sbi cre bra tae sly cit sot bdi gma bna
Paralog 6 2 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00906 [list] [network] Carotenoid biosynthesis (32 genes)
GO BP
GO:0016124 [list] [network] xanthophyll catabolic process  (3 genes)  IDA  
GO:0016121 [list] [network] carotene catabolic process  (4 genes)  IDA IMP  
GO:1901601 [list] [network] strigolactone biosynthetic process  (7 genes)  IDA  
GO:0009635 [list] [network] response to herbicide  (11 genes)  IEP  
GO:0010223 [list] [network] secondary shoot formation  (25 genes)  IGI IMP  
GO:0009926 [list] [network] auxin polar transport  (72 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  IDA  
GO MF
GO:0045549 [list] [network] 9-cis-epoxycarotenoid dioxygenase activity  (7 genes)  IDA  
GO:0016702 [list] [network] oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen  (29 genes)  IDA  
Protein NP_001318427.1 [sequence] [blastp]
NP_001324720.1 [sequence] [blastp]
NP_182026.5 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  cyto_nucl 3,  cysk_nucl 3  (predict for NP_001318427.1)
nucl 4,  chlo 4,  cyto 1,  cysk 1,  cyto_mito 1  (predict for NP_001324720.1)
chlo 6,  nucl 3,  cyto 1,  cyto_mito 1  (predict for NP_182026.5)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001318427.1)
chlo 6  (predict for NP_001324720.1)
chlo 6  (predict for NP_182026.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
CCD7
ath-m.9
for
CCD7
ath-m.4.bio
for
CCD7
ath-m.4.hor
for
CCD7
ath-m.4.str
for
CCD7
ath-m.4.tis
for
CCD7
ghi-r.1
for
107945551
ghi-r.1
for
107923980
vvi-u.5
for
100242750
ppo-u.5
for
18105151
mtr-u.5
for
11438975
nta-r.1
for
107767822
nta-r.1
for
107771847
osa-u.5
for
4336591
zma-u.5
for
100502521
hvu-r.1
for
123427568
sbi-r.1
for
8055963


Ortholog ID: 9440
Species ghi ghi vvi ppo mtr nta nta osa zma hvu sbi
Symbol LOC107945551 LOC107923980 LOC100242750 LOC18105151 LOC11438975 LOC107767822 LOC107771847 LOC4336591 LOC100502521 LOC123427568 LOC8055963
Function* carotenoid cleavage dioxygenase 7, chloroplastic carotenoid cleavage dioxygenase 7, chloroplastic carotenoid cleavage dioxygenase 7, chloroplastic carotenoid cleavage dioxygenase 7, chloroplastic carotenoid cleavage dioxygenase 7, chloroplastic carotenoid cleavage dioxygenase 7, chloroplastic-like carotenoid cleavage dioxygenase 7, chloroplastic-like carotenoid cleavage dioxygenase 7, chloroplastic-like uncharacterized LOC100502521 carotenoid cleavage dioxygenase 7, chloroplastic carotenoid cleavage dioxygenase 7, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00906 Carotenoid biosynthesis 3
ppo02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
nta04146 Peroxisome 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107945551 107923980 100242750 18105151 11438975 107767822 107771847 4336591 100502521 123427568 8055963
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