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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   SLY1   F-box family protein 
 ath-u.5   SLY1   F-box family protein 
 ath-r.7   SLY1   F-box family protein 
 ath-m.9   SLY1   F-box family protein 
 ath-e.2   SLY1   F-box family protein 
 ath-m.4.bio   SLY1   F-box family protein 
 ath-m.4.hor   SLY1   F-box family protein 
 ath-m.4.str   SLY1   F-box family protein 
 ath-m.4.tis   SLY1   F-box family protein 
 bra-r.6   103861839   F-box protein GID2 
 bna-r.1   106441806   F-box protein GID2 
 bna-r.1   106376023   F-box protein GID2-like 
 ghi-r.1   107930621   F-box protein GID2 
 ghi-r.1   121217887   F-box protein GID2 
 ghi-r.1   121229026   F-box protein GID2 
 cit-r.1   127902651   F-box protein GID2 
 gma-u.5   100802513   F-box protein GID2 
 gma-u.5   100801734   F-box protein GID2 
 gma-u.5   100794333   F-box protein GID2 
 vvi-u.5   100245654   F-box protein GID2 
 vvi-u.5   100266007   F-box protein GID2 
 ppo-u.5   7462857   F-box protein GID2 
 ppo-u.5   18104831   F-box protein GID2 
 mtr-u.5   25489913   F-box protein GID2 
 sly-u.5   GID2   F-box protein GID2 
 sot-r.1   102580736   uncharacterized LOC102580736 
 nta-r.1   107778447   F-box protein GID2 
 nta-r.1   107763036   F-box protein GID2-like 
 zma-u.5   100283034   F-box protein GID2 
 zma-u.5   103653681   F-box protein GID2 
 tae-r.2   123060026   F-box protein GID2 
 tae-r.2   123068514   F-box protein GID2 
 hvu-r.1   123442620   F-box protein GID2-like 
 sbi-r.1   8055404   F-box protein GID2 
 bdi-r.1   100841148   F-box protein GID2 

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Top 50 coexpressed genes to SLY1 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SLY1 (ath-m.4.lig coexpression data)

CoexMap"828522"


athSLY1 | Entrez gene ID : 828522      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta zma tae hvu sbi bdi cre osa
Paralog 9 1 2 3 1 3 2 2 1 1 1 2 2 2 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0009939 [list] [network] positive regulation of gibberellic acid mediated signaling pathway  (9 genes)  IMP  
GO:0009938 [list] [network] negative regulation of gibberellic acid mediated signaling pathway  (15 genes)  IGI  
GO:0010162 [list] [network] seed dormancy process  (42 genes)  IMP  
GO:0009845 [list] [network] seed germination  (111 genes)  IGI IMP  
GO:0009739 [list] [network] response to gibberellin  (125 genes)  IGI  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (41 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_194152.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  mito 1,  extr 1,  cysk 1,  chlo_mito 1,  cyto_mito 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_194152.1)
Subcellular
localization
TargetP
other 9  (predict for NP_194152.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
SLY1
ath-u.5
for
SLY1
ath-r.7
for
SLY1
ath-m.9
for
SLY1
ath-e.2
for
SLY1
ath-m.4.bio
for
SLY1
ath-m.4.hor
for
SLY1
ath-m.4.str
for
SLY1
ath-m.4.tis
for
SLY1
bra-r.6
for
103861839
bna-r.1
for
106441806
bna-r.1
for
106376023
ghi-r.1
for
107930621
ghi-r.1
for
121217887
ghi-r.1
for
121229026
cit-r.1
for
127902651
gma-u.5
for
100802513
gma-u.5
for
100801734
gma-u.5
for
100794333
vvi-u.5
for
100245654
vvi-u.5
for
100266007
ppo-u.5
for
7462857
ppo-u.5
for
18104831
mtr-u.5
for
25489913
sly-u.5
for
GID2
sot-r.1
for
102580736
nta-r.1
for
107778447
nta-r.1
for
107763036
zma-u.5
for
100283034
zma-u.5
for
103653681
tae-r.2
for
123060026
tae-r.2
for
123068514
hvu-r.1
for
123442620
sbi-r.1
for
8055404
bdi-r.1
for
100841148


Ortholog ID: 5808
Species ath bra bna bna ghi ghi ghi cit gma gma gma vvi vvi ppo ppo mtr sly sot nta nta zma zma tae hvu sbi bdi
Symbol SLY1 LOC103861839 LOC106441806 LOC106376023 LOC121217887 LOC121229026 LOC121230292 LOC127902651 LOC100802513 LOC100801734 LOC100794333 LOC100245654 LOC100266007 LOC7462857 LOC18104831 LOC25489913 GID2 LOC102580736 LOC107778447 LOC107763036 LOC100283034 LOC103653681 LOC123060026 LOC123442620 LOC8055404 LOC100841148
Function* F-box family protein F-box protein GID2 F-box protein GID2 F-box protein GID2-like F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2 uncharacterized LOC102580736 F-box protein GID2 F-box protein GID2-like F-box protein GID2 F-box protein GID2 F-box protein GID2 F-box protein GID2-like F-box protein GID2 F-box protein GID2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna04382 Cornified envelope formation 5
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna04382 Cornified envelope formation 5
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00592 alpha-Linolenic acid metabolism 2
nta04075 Plant hormone signal transduction 2
nta03040 Spliceosome 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 5
zma04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828522 103861839 106441806 106376023 121217887 121229026 121230292 127902651 100802513 100801734 100794333 100245654 100266007 7462857 18104831 25489913 101243703 102580736 107778447 107763036 100283034 103653681 123060026 123442620 8055404 100841148
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