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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   FIB1   fibrillarin 1 
 ath-u.5   FIB1   fibrillarin 1 
 ath-r.7   FIB1   fibrillarin 1 
 ath-m.9   FIB1   fibrillarin 1 
 ath-e.2   FIB1   fibrillarin 1 
 ath-m.4.bio   FIB1   fibrillarin 1 
 ath-m.4.hor   FIB1   fibrillarin 1 
 ath-m.4.str   FIB1   fibrillarin 1 
 ath-m.4.tis   FIB1   fibrillarin 1 
 ath-u.5   FIB2   fibrillarin 2 
 bra-r.6   103861582   mediator of RNA polymerase II transcription subunit 36a 
 bra-r.6   103863368   probable mediator of RNA polymerase II transcription subunit 36b 
 bra-r.6   103834862   mediator of RNA polymerase II transcription subunit 36a 
 bna-r.1   106442926   rRNA 2'-O-methyltransferase fibrillarin 2-like 
 bna-r.1   106409785   rRNA 2'-O-methyltransferase fibrillarin 1 
 bna-r.1   106347100   rRNA 2'-O-methyltransferase fibrillarin 2 
 ghi-r.1   121209584   rRNA 2'-O-methyltransferase fibrillarin 2 
 ghi-r.1   107951276   rRNA 2'-O-methyltransferase fibrillarin 2 
 ghi-r.1   107917830   rRNA 2'-O-methyltransferase fibrillarin 1 
 cit-r.1   102629115   rRNA 2'-O-methyltransferase fibrillarin 1-like 
 gma-u.5   100797625   rRNA 2'-O-methyltransferase fibrillarin 2 
 gma-u.5   100789137   rRNA 2'-O-methyltransferase fibrillarin 2 
 vvi-u.5   100266267   rRNA 2'-O-methyltransferase fibrillarin 1 
 ppo-u.5   7484920   rRNA 2'-O-methyltransferase fibrillarin 1 
 ppo-u.5   7474066   rRNA 2'-O-methyltransferase fibrillarin 1 
 mtr-u.5   11440720   rRNA 2'-O-methyltransferase fibrillarin 1 
 mtr-u.5   25496400   rRNA 2'-O-methyltransferase fibrillarin 1 
 sly-u.5   101261490   rRNA 2'-O-methyltransferase fibrillarin 2-like 
 sot-r.1   102584645   mediator of RNA polymerase II transcription subunit 36a-like 
 nta-r.1   107779020   rRNA 2'-O-methyltransferase fibrillarin 1-like 
 nta-r.1   107768907   mediator of RNA polymerase II transcription subunit 36a-like 
 osa-u.5   4331181   rRNA 2'-O-methyltransferase fibrillarin 2 
 osa-u.5   9266224   rRNA 2'-O-methyltransferase fibrillarin 1 
 zma-u.5   100282167   uncharacterized LOC100282167 
 tae-r.2   123165498   rRNA 2'-O-methyltransferase fibrillarin 1 
 tae-r.2   123129055   rRNA 2'-O-methyltransferase fibrillarin 1 
 tae-r.2   123139921   rRNA 2'-O-methyltransferase fibrillarin 1 
 hvu-r.1   123404338   rRNA 2'-O-methyltransferase fibrillarin 1-like 
 hvu-r.1   123407385   rRNA 2'-O-methyltransferase fibrillarin 1-like 
 sbi-r.1   8065563   probable mediator of RNA polymerase II transcription subunit 36b 
 sbi-r.1   8059696   probable mediator of RNA polymerase II transcription subunit 36b 
 bdi-r.1   100846789   probable mediator of RNA polymerase II transcription subunit 36b 
 bdi-r.1   100840221   probable mediator of RNA polymerase II transcription subunit 36b 
 cre-r.1   CHLRE_02g077300v5   uncharacterized protein 

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Top 50 coexpressed genes to FIB1 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FIB1 (ath-m.4.lig coexpression data)

CoexMap"835323"


athFIB1 | Entrez gene ID : 835323      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 2 1 2 2 1 1 2 2 1 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO:0001510 [list] [network] RNA methylation  (40 genes)  IGI  
GO:0006364 [list] [network] rRNA processing  (183 genes)  IGI  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA IDA ISS  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0030515 [list] [network] snoRNA binding  (5 genes)  ISS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001119418.1 [sequence] [blastp]
NP_568772.3 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 4  (predict for NP_001119418.1)
cyto 6,  chlo 4  (predict for NP_568772.3)
Subcellular
localization
TargetP
mito 4,  other 4  (predict for NP_001119418.1)
mito 4,  other 4  (predict for NP_568772.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
FIB1
ath-u.5
for
FIB1
ath-r.7
for
FIB1
ath-m.9
for
FIB1
ath-e.2
for
FIB1
ath-m.4.bio
for
FIB1
ath-m.4.hor
for
FIB1
ath-m.4.str
for
FIB1
ath-m.4.tis
for
FIB1
ath-u.5
for
FIB2
bra-r.6
for
103861582
bra-r.6
for
103863368
bra-r.6
for
103834862
bna-r.1
for
106442926
bna-r.1
for
106409785
bna-r.1
for
106347100
ghi-r.1
for
121209584
ghi-r.1
for
107951276
ghi-r.1
for
107917830
cit-r.1
for
102629115
gma-u.5
for
100797625
gma-u.5
for
100789137
vvi-u.5
for
100266267
ppo-u.5
for
7484920
ppo-u.5
for
7474066
mtr-u.5
for
11440720
mtr-u.5
for
25496400
sly-u.5
for
101261490
sot-r.1
for
102584645
nta-r.1
for
107779020
nta-r.1
for
107768907
osa-u.5
for
4331181
osa-u.5
for
9266224
zma-u.5
for
100282167
tae-r.2
for
123165498
tae-r.2
for
123129055
tae-r.2
for
123139921
hvu-r.1
for
123404338
hvu-r.1
for
123407385
sbi-r.1
for
8065563
sbi-r.1
for
8059696
bdi-r.1
for
100846789
bdi-r.1
for
100840221
cre-r.1
for
CHLRE_02g077300v5


Ortholog ID: 3718
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol FIB1 FIB2 LOC103861582 LOC103863368 LOC106409785 LOC106426404 LOC106444625 LOC107917830 LOC107908112 LOC107904604 LOC102629115 LOC100797625 LOC100789137 LOC100266267 LOC7484920 LOC7474066 LOC11440720 LOC25496400 LOC101261490 LOC102584645 LOC107779020 LOC107768907 LOC4331181 LOC9266224 LOC100282167 LOC123165498 LOC123139921 LOC123159877 LOC123404338 LOC123407385 LOC8065563 LOC8059696 LOC100846789 LOC100840221 CHLRE_02g077300v5
Function* fibrillarin 1 fibrillarin 2 mediator of RNA polymerase II transcription subunit 36a probable mediator of RNA polymerase II transcription subunit 36b rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 2 rRNA 2'-O-methyltransferase fibrillarin 2 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 2 rRNA 2'-O-methyltransferase fibrillarin 1-like rRNA 2'-O-methyltransferase fibrillarin 2 rRNA 2'-O-methyltransferase fibrillarin 2 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 2-like mediator of RNA polymerase II transcription subunit 36a-like rRNA 2'-O-methyltransferase fibrillarin 1-like mediator of RNA polymerase II transcription subunit 36a-like rRNA 2'-O-methyltransferase fibrillarin 2 rRNA 2'-O-methyltransferase fibrillarin 1 uncharacterized LOC100282167 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 1 rRNA 2'-O-methyltransferase fibrillarin 1-like rRNA 2'-O-methyltransferase fibrillarin 1-like probable mediator of RNA polymerase II transcription subunit 36b probable mediator of RNA polymerase II transcription subunit 36b probable mediator of RNA polymerase II transcription subunit 36b probable mediator of RNA polymerase II transcription subunit 36b uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 12
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 13
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 12
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi04626 Plant-pathogen interaction 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03008 Ribosome biogenesis in eukaryotes 6
gma00240 Pyrimidine metabolism 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 10
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03008 Ribosome biogenesis in eukaryotes 5
nta03082 ATP-dependent chromatin remodeling 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta03008 Ribosome biogenesis in eukaryotes 7
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03008 Ribosome biogenesis in eukaryotes 3
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 12
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 8
cre00230 Purine metabolism 2
cre01232 Nucleotide metabolism 2
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835323 828668 103861582 103863368 106409785 106426404 106444625 107917830 107908112 107904604 102629115 100797625 100789137 100266267 7484920 7474066 11440720 25496400 101261490 102584645 107779020 107768907 4331181 9266224 100282167 123165498 123139921 123159877 123404338 123407385 8065563 8059696 100846789 100840221 5727229
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