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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   SC35   serine/arginine-rich splicing factor-like protein, putative 
 ath-u.5   SC35   serine/arginine-rich splicing factor-like protein, putative 
 ath-r.7   SC35   serine/arginine-rich splicing factor-like protein, putative 
 ath-m.9   SC35   serine/arginine-rich splicing factor-like protein, putative 
 ath-e.2   SC35   serine/arginine-rich splicing factor-like protein, putative 
 ath-m.4.bio   SC35   serine/arginine-rich splicing factor-like protein, putative 
 ath-m.4.hor   SC35   serine/arginine-rich splicing factor-like protein, putative 
 ath-m.4.str   SC35   serine/arginine-rich splicing factor-like protein, putative 
 ath-m.4.tis   SC35   serine/arginine-rich splicing factor-like protein, putative 
 bra-r.6   103873839   serine/arginine-rich splicing factor SC35 
 bna-r.1   106426678   serine/arginine-rich splicing factor SC35 
 bna-r.1   106348073   serine/arginine-rich splicing factor SC35-like 
 ghi-r.1   121214820   serine/arginine-rich splicing factor SC35 
 ghi-r.1   107949131   serine/arginine-rich splicing factor SC35 
 ghi-r.1   107948604   serine/arginine-rich splicing factor SC35 
 cit-r.1   102609737   serine/arginine-rich splicing factor SC35 
 cit-r.1   102613407   serine/arginine-rich splicing factor SC35 
 gma-u.5   100804370   serine/arginine-rich splicing factor SC35-like protein 
 gma-u.5   100778928   serine/arginine-rich splicing factor SC35 
 vvi-u.5   100243776   serine/arginine-rich splicing factor SC35 
 vvi-u.5   100242306   serine/arginine-rich splicing factor SC35 
 ppo-u.5   7486602   serine/arginine-rich splicing factor SC35 
 ppo-u.5   7463216   serine/arginine-rich splicing factor SC35 
 ppo-u.5   18096633   serine/arginine-rich splicing factor SC35 
 mtr-u.5   11409922   serine/arginine-rich splicing factor SC35 
 mtr-u.5   25493273   serine/arginine-rich splicing factor SC35 
 sly-u.5   101257217   serine/arginine-rich splicing factor SC35 
 sly-u.5   101251771   serine/arginine-rich splicing factor SC35 
 sot-r.1   102583092   serine/arginine-rich splicing factor SC35-like 
 sot-r.1   102597653   serine/arginine-rich splicing factor 2-like 
 nta-r.1   107831149   uncharacterized LOC107831149 
 nta-r.1   107819647   serine/arginine-rich splicing factor SC35-like 
 nta-r.1   107808980   serine/arginine-rich splicing factor SC35 
 osa-u.5   4333005   serine/arginine-rich splicing factor SC35 
 osa-u.5   4345884   serine/arginine-rich splicing factor SC35 
 osa-u.5   4343955   serine/arginine-rich splicing factor SC35 
 zma-u.5   100282036   uncharacterized LOC100282036 
 zma-u.5   100272627   uncharacterized LOC100272627 
 tae-r.2   123187898   serine/arginine-rich splicing factor SC35 
 tae-r.2   123044152   serine/arginine-rich splicing factor SC35 
 tae-r.2   123052029   serine/arginine-rich splicing factor SC35 
 hvu-r.1   123425239   serine/arginine-rich splicing factor SC35 
 sbi-r.1   110436787   serine/arginine-rich splicing factor SC35-like 
 sbi-r.1   8080466   serine/arginine-rich splicing factor SC35 
 sbi-r.1   110432886   serine/arginine-rich splicing factor SC35-like 
 bdi-r.1   100826320   serine/arginine-rich splicing factor SC35 
 bdi-r.1   100824108   serine/arginine-rich splicing factor SC35 

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Top 50 coexpressed genes to SC35 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SC35 (ath-m.4.lig coexpression data)

CoexMap"836541"


athSC35 | Entrez gene ID : 836541      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 2 2 2 3 2 2 2 3 3 2 3 1 3 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  TAS  
GO:0008380 [list] [network] RNA splicing  (195 genes)  NAS  
GO CC
GO:0016607 [list] [network] nuclear speck  (52 genes)  IDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_201225.1 [sequence] [blastp]
NP_851261.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_201225.1)
nucl 10  (predict for NP_851261.1)
Subcellular
localization
TargetP
other 8  (predict for NP_201225.1)
other 8  (predict for NP_851261.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
SC35
ath-u.5
for
SC35
ath-r.7
for
SC35
ath-m.9
for
SC35
ath-e.2
for
SC35
ath-m.4.bio
for
SC35
ath-m.4.hor
for
SC35
ath-m.4.str
for
SC35
ath-m.4.tis
for
SC35
bra-r.6
for
103873839
bna-r.1
for
106426678
bna-r.1
for
106348073
ghi-r.1
for
121214820
ghi-r.1
for
107949131
ghi-r.1
for
107948604
cit-r.1
for
102609737
cit-r.1
for
102613407
gma-u.5
for
100804370
gma-u.5
for
100778928
vvi-u.5
for
100243776
vvi-u.5
for
100242306
ppo-u.5
for
7486602
ppo-u.5
for
7463216
ppo-u.5
for
18096633
mtr-u.5
for
11409922
mtr-u.5
for
25493273
sly-u.5
for
101257217
sly-u.5
for
101251771
sot-r.1
for
102583092
sot-r.1
for
102597653
nta-r.1
for
107831149
nta-r.1
for
107819647
nta-r.1
for
107808980
osa-u.5
for
4333005
osa-u.5
for
4345884
osa-u.5
for
4343955
zma-u.5
for
100282036
zma-u.5
for
100272627
tae-r.2
for
123187898
tae-r.2
for
123044152
tae-r.2
for
123052029
hvu-r.1
for
123425239
sbi-r.1
for
110436787
sbi-r.1
for
8080466
sbi-r.1
for
110432886
bdi-r.1
for
100826320
bdi-r.1
for
100824108


Ortholog ID: 3991
Species ath bra bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma tae tae tae hvu sbi sbi sbi bdi bdi
Symbol SC35 LOC103873839 LOC106426678 LOC106348073 LOC121214820 LOC107949131 LOC107948604 LOC102609737 LOC102613407 LOC100804370 LOC100778928 LOC100243776 LOC100242306 LOC7486602 LOC7463216 LOC18096633 LOC11409922 LOC25493273 LOC101257217 LOC101251771 LOC102583092 LOC102597653 LOC107831149 LOC107819647 LOC107787334 LOC4333005 LOC4345884 LOC4343955 LOC100282036 LOC100191156 LOC123187898 LOC123044152 LOC123052029 LOC123425239 LOC110436787 LOC8080466 LOC110432886 LOC100826320 LOC100824108
Function* serine/arginine-rich splicing factor-like protein, putative serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35-like serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35-like protein serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35-like serine/arginine-rich splicing factor 2-like uncharacterized LOC107831149 serine/arginine-rich splicing factor SC35-like serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 uncharacterized LOC100282036 arginine/serine-rich splicing factor SC32 transcript II serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35-like serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35-like serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
ath03013 Nucleocytoplasmic transport 3
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04120 Ubiquitin mediated proteolysis 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04626 Plant-pathogen interaction 3
vvi03040 Spliceosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
mtr00510 N-Glycan biosynthesis 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 7
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03040 Spliceosome 3
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836541 103873839 106426678 106348073 121214820 107949131 107948604 102609737 102613407 100804370 100778928 100243776 100242306 7486602 7463216 18096633 11409922 25493273 101257217 101251771 102583092 102597653 107831149 107819647 107787334 4333005 4345884 4343955 100282036 100191156 123187898 123044152 123052029 123425239 110436787 8080466 110432886 100826320 100824108
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