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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT1G28060   Pre-mRNA-splicing factor 3 
 ath-u.5   AT1G28060   Pre-mRNA-splicing factor 3 
 ath-r.7   AT1G28060   Pre-mRNA-splicing factor 3 
 ath-m.9   AT1G28060   Pre-mRNA-splicing factor 3 
 ath-e.2   AT1G28060   Pre-mRNA-splicing factor 3 
 ath-m.4.bio   AT1G28060   Pre-mRNA-splicing factor 3 
 ath-m.4.hor   AT1G28060   Pre-mRNA-splicing factor 3 
 ath-m.4.str   AT1G28060   Pre-mRNA-splicing factor 3 
 ath-m.4.tis   AT1G28060   Pre-mRNA-splicing factor 3 
 bra-r.6   103838996   protein RDM16 
 bna-r.1   106361702   protein RDM16-like 
 bna-r.1   106363204   protein RDM16-like 
 bna-r.1   106389563   protein RDM16 
 ghi-r.1   107891161   protein RDM16 
 ghi-r.1   107930725   protein RDM16 
 ghi-r.1   107941564   protein RDM16 
 cit-r.1   102614658   protein RDM16 
 gma-u.5   100812519   protein RDM16 
 gma-u.5   100802774   protein RDM16 
 gma-u.5   100797535   protein RDM16 
 vvi-u.5   100248403   protein RDM16 
 ppo-u.5   18108997   protein RDM16 
 ppo-u.5   7489610   protein RDM16 
 mtr-u.5   11428338   protein RDM16 
 mtr-u.5   112421393   protein RDM16 
 sly-u.5   101255099   protein RDM16 
 sly-u.5   101258563   protein RDM16-like 
 sot-r.1   102596525   U4/U6 small nuclear ribonucleoprotein Prp3-like 
 sot-r.1   102596022   U4/U6 small nuclear ribonucleoprotein Prp3 
 nta-r.1   107811721   protein RDM16-like 
 nta-r.1   107792183   protein RDM16 
 osa-u.5   4346506   protein RDM16 
 zma-u.5   100217215   Pre-mRNA-splicing factor 3 
 zma-u.5   100279564   Pre-mRNA-splicing factor 3 
 tae-r.2   123165806   protein RDM16 
 tae-r.2   123152974   protein RDM16 
 hvu-r.1   123452209   protein RDM16 
 sbi-r.1   110434704   protein RDM16 
 bdi-r.1   100834120   protein RDM16 
 cre-r.1   CHLRE_09g416000v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G28060 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G28060 (ath-m.4.lig coexpression data)

CoexMap"839699"


athAT1G28060 | Entrez gene ID : 839699      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 3 1 3 1 2 2 2 2 2 1 2 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (44 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001319094.1 [sequence] [blastp]
NP_001321377.1 [sequence] [blastp]
NP_174127.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1  (predict for NP_001319094.1)
nucl 9,  cyto 1  (predict for NP_001321377.1)
nucl 9,  cyto 1  (predict for NP_174127.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001319094.1)
other 7  (predict for NP_001321377.1)
other 7  (predict for NP_174127.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT1G28060
ath-u.5
for
AT1G28060
ath-r.7
for
AT1G28060
ath-m.9
for
AT1G28060
ath-e.2
for
AT1G28060
ath-m.4.bio
for
AT1G28060
ath-m.4.hor
for
AT1G28060
ath-m.4.str
for
AT1G28060
ath-m.4.tis
for
AT1G28060
bra-r.6
for
103838996
bna-r.1
for
106361702
bna-r.1
for
106363204
bna-r.1
for
106389563
ghi-r.1
for
107891161
ghi-r.1
for
107930725
ghi-r.1
for
107941564
cit-r.1
for
102614658
gma-u.5
for
100812519
gma-u.5
for
100802774
gma-u.5
for
100797535
vvi-u.5
for
100248403
ppo-u.5
for
18108997
ppo-u.5
for
7489610
mtr-u.5
for
11428338
mtr-u.5
for
112421393
sly-u.5
for
101255099
sly-u.5
for
101258563
sot-r.1
for
102596525
sot-r.1
for
102596022
nta-r.1
for
107811721
nta-r.1
for
107792183
osa-u.5
for
4346506
zma-u.5
for
100217215
zma-u.5
for
100279564
tae-r.2
for
123165806
tae-r.2
for
123152974
hvu-r.1
for
123452209
sbi-r.1
for
110434704
bdi-r.1
for
100834120
cre-r.1
for
CHLRE_09g416000v5


Ortholog ID: 4933
Species ath bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol AT1G28060 LOC103838996 LOC106361702 LOC106363204 LOC106389563 LOC107891161 LOC107930725 LOC107941564 LOC102614658 LOC100812519 LOC100802774 LOC100797535 LOC100248403 LOC18108997 LOC7489610 LOC11428338 LOC112421393 LOC101255099 LOC101258563 LOC102596525 LOC102596022 LOC107811721 LOC107792183 LOC4346506 LOC100217215 LOC100279564 LOC123152974 LOC123087925 LOC123452209 LOC110434704 LOC100834120 CHLRE_09g416000v5
Function* Pre-mRNA-splicing factor 3 protein RDM16 protein RDM16-like protein RDM16-like protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16-like U4/U6 small nuclear ribonucleoprotein Prp3-like U4/U6 small nuclear ribonucleoprotein Prp3 protein RDM16-like protein RDM16 protein RDM16 Pre-mRNA-splicing factor 3 Pre-mRNA-splicing factor 3 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03018 RNA degradation 2
gma03250 Viral life cycle - HIV-1 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03015 mRNA surveillance pathway 3
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
sbi03015 mRNA surveillance pathway 4
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839699 103838996 106361702 106363204 106389563 107891161 107930725 107941564 102614658 100812519 100802774 100797535 100248403 18108997 7489610 11428338 112421393 101255099 101258563 102596525 102596022 107811721 107792183 4346506 100217215 100279564 123152974 123087925 123452209 110434704 100834120 5722376
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