ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	TLP6	tubby like protein 6
ath-u.5	TLP6	tubby like protein 6
ath-r.7	TLP6	tubby like protein 6
ath-m.9	TLP6	tubby like protein 6
ath-e.2	TLP6	tubby like protein 6
ath-m.4.bio	TLP6	tubby like protein 6
ath-m.4.hor	TLP6	tubby like protein 6
ath-m.4.str	TLP6	tubby like protein 6
ath-m.4.tis	TLP6	tubby like protein 6
ath-u.5	TLP2	tubby like protein 2
ath-u.5	TLP1	tubby like protein 1
ath-u.5	TLP7	tubby like protein 7
bra-r.6	103832144	tubby-like F-box protein 1
bra-r.6	103845812	tubby-like F-box protein 11
bra-r.6	103832675	tubby-like F-box protein 7
bna-r.1	106436154	tubby-like F-box protein 3
bna-r.1	106451599	tubby-like F-box protein 7
bna-r.1	106367685	tubby-like F-box protein 1
ghi-r.1	107916328	tubby-like F-box protein 2
ghi-r.1	107914107	tubby-like F-box protein 8
ghi-r.1	107913644	tubby-like F-box protein 3
cit-r.1	102617444	tubby-like F-box protein 8
cit-r.1	102607292	tubby-like F-box protein 5
cit-r.1	102613939	tubby-like F-box protein 8
gma-u.5	100805161	tubby-like F-box protein 3-like
gma-u.5	100815464	tubby-like F-box protein 6
gma-u.5	100805380	tubby-like F-box protein 2
vvi-u.5	100854941	tubby-like F-box protein 7
vvi-u.5	100258055	tubby-like F-box protein 3
vvi-u.5	100246937	tubby-like F-box protein 8
ppo-u.5	7468777	tubby-like F-box protein 8
ppo-u.5	7495478	tubby-like F-box protein 5
ppo-u.5	7477619	tubby-like F-box protein 5
mtr-u.5	11434330	tubby-like F-box protein 8
mtr-u.5	11406837	tubby-like F-box protein 7
mtr-u.5	11412143	tubby-like F-box protein 5
sly-u.5	101262472	tubby-like F-box protein 5
sly-u.5	101259367	tubby-like F-box protein 3
sly-u.5	101252229	tubby-like F-box protein 8
sot-r.1	102602432	tubby-like F-box protein 8
sot-r.1	102596237	tubby-like F-box protein 8
sot-r.1	102589959	tubby-like F-box protein 6
nta-r.1	107788144	tubby-like F-box protein 3
nta-r.1	107809196	tubby-like F-box protein 5
nta-r.1	107812383	tubby-like F-box protein 8
osa-u.5	4325075	tubby-like F-box protein 3
osa-u.5	4351582	tubby-like F-box protein 14
osa-u.5	4349867	tubby-like F-box protein 13
zma-u.5	100284076	uncharacterized LOC100284076
zma-u.5	100282475	tubby protein
zma-u.5	100281288	uncharacterized LOC100281288
tae-r.2	123070594	tubby-like F-box protein 1
tae-r.2	123071539	tubby-like F-box protein 3
tae-r.2	123079000	tubby-like F-box protein 1
hvu-r.1	123446653	tubby-like F-box protein 8
hvu-r.1	123444802	tubby-like F-box protein 3
hvu-r.1	123394922	tubby-like F-box protein 14
sbi-r.1	8060975	tubby-like F-box protein 3
sbi-r.1	8061846	tubby-like F-box protein 1
sbi-r.1	8070670	tubby-like F-box protein 13
bdi-r.1	100836023	tubby-like F-box protein 8
bdi-r.1	100835634	tubby-like F-box protein 9
bdi-r.1	100835281	tubby-like F-box protein 14
cre-r.1	CHLRE_12g520650v5	uncharacterized protein

Top 50 coexpressed genes to TLP6 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to TLP6 (ath-m.4.lig coexpression data)

CoexMap"841130"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009555 [list] [network] pollen development	(385 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	TAS

GO CC

GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001185159.1 [sequence] [blastp]
NP_001322089.1 [sequence] [blastp]
NP_175160.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto_nucl 5, cyto 3	(predict for NP_001185159.1)
nucl 4, chlo 2, mito 2, cyto_nucl 2, chlo_mito 2	(predict for NP_001322089.1)
nucl 6, cyto_nucl 5, cyto 3	(predict for NP_175160.2)

Subcellular
localization
TargetP

other 7	(predict for NP_001185159.1)
chlo 4, mito 3	(predict for NP_001322089.1)
other 7	(predict for NP_175160.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for TLP6	ath-u.5 for TLP6	ath-r.7 for TLP6	ath-m.9 for TLP6	ath-e.2 for TLP6	ath-m.4.bio for TLP6	ath-m.4.hor for TLP6	ath-m.4.str for TLP6	ath-m.4.tis for TLP6	ath-u.5 for TLP2	ath-u.5 for TLP1	ath-u.5 for TLP7	bra-r.6 for 103832144	bra-r.6 for 103845812	bra-r.6 for 103832675	bna-r.1 for 106436154	bna-r.1 for 106451599	bna-r.1 for 106367685	ghi-r.1 for 107916328	ghi-r.1 for 107914107	ghi-r.1 for 107913644	cit-r.1 for 102617444	cit-r.1 for 102607292	cit-r.1 for 102613939	gma-u.5 for 100805161	gma-u.5 for 100815464	gma-u.5 for 100805380	vvi-u.5 for 100854941	vvi-u.5 for 100258055	vvi-u.5 for 100246937	ppo-u.5 for 7468777	ppo-u.5 for 7495478	ppo-u.5 for 7477619	mtr-u.5 for 11434330	mtr-u.5 for 11406837	mtr-u.5 for 11412143	sly-u.5 for 101262472	sly-u.5 for 101259367	sly-u.5 for 101252229	sot-r.1 for 102602432	sot-r.1 for 102596237	sot-r.1 for 102589959	nta-r.1 for 107788144	nta-r.1 for 107809196	nta-r.1 for 107812383	osa-u.5 for 4325075	osa-u.5 for 4351582	osa-u.5 for 4349867	zma-u.5 for 100284076	zma-u.5 for 100282475	zma-u.5 for 100281288	tae-r.2 for 123070594	tae-r.2 for 123071539	tae-r.2 for 123079000	hvu-r.1 for 123446653	hvu-r.1 for 123444802	hvu-r.1 for 123394922	sbi-r.1 for 8060975	sbi-r.1 for 8061846	sbi-r.1 for 8070670	bdi-r.1 for 100836023	bdi-r.1 for 100835634	bdi-r.1 for 100835281	cre-r.1 for CHLRE_12g520650v5

Ortholog

Ortholog ID: 109

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TLP6

TLP7

TLP9

Function^*

tubby like protein 6

tubby like protein 7

tubby-like protein 9

tubby-like F-box protein 10

tubby-like F-box protein 6

tubby-like F-box protein 7

tubby-like F-box protein 10

tubby-like F-box protein 6

tubby-like F-box protein 10

tubby-like F-box protein 3

tubby-like F-box protein 2

tubby-like F-box protein 3

tubby-like F-box protein 8

tubby-like F-box protein 3

tubby-like F-box protein 7

tubby-like F-box protein 2

tubby-like F-box protein 8

tubby-like F-box protein 5

tubby-like F-box protein 3

tubby-like F-box protein 5

tubby-like F-box protein 3

tubby-like F-box protein 5

tubby-like F-box protein 8

tubby-like F-box protein 2

tubby-like F-box protein 7

tubby-like F-box protein 3

tubby-like F-box protein 5

tubby-like F-box protein 6

tubby-like F-box protein 8

tubby-like F-box protein 3

tubby-like F-box protein 8

tubby-like F-box protein 14

tubby-like F-box protein 5

tubby-like F-box protein 1

tubby-like F-box protein 6

tubby-like F-box protein 7

tubby protein

uncharacterized LOC100193930

uncharacterized LOC103630411

tubby-like F-box protein 13

tubby-like F-box protein 5

tubby-like F-box protein 12

tubby-like F-box protein 3

tubby-like F-box protein 11

tubby-like F-box protein 12

tubby-like F-box protein 13

tubby-like F-box protein 8

tubby-like F-box protein 9

tubby-like F-box protein 3

tubby-like F-box protein 13

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03250	Viral life cycle - HIV-1	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00350	Tyrosine metabolism	2
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00640	Propanoate metabolism	2
ghi00785	Lipoic acid metabolism	2
ghi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi04148	Efferocytosis	2
ghi00061	Fatty acid biosynthesis	2
ghi00620	Pyruvate metabolism	2
ghi00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	3
cit04141	Protein processing in endoplasmic reticulum	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi04016	MAPK signaling pathway - plant	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00541	Biosynthesis of various nucleotide sugars	3
vvi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3
ppo00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00562	Inositol phosphate metabolism	2
sly04070	Phosphatidylinositol signaling system	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2
sly04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	2
sot03015	mRNA surveillance pathway	2
sot04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	8
nta03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa04016	MAPK signaling pathway - plant	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	5
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04136	Autophagy - other	3
hvu00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi04144	Endocytosis	3
sbi04626	Plant-pathogen interaction	2
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	3
cre04130	SNARE interactions in vesicular transport	2

Expression

Expression pattern

Entrez Gene ID^*

841130

841766

819812

103840554

103847942

103849510

106424621

106371857

106361872

107888922

107897628

107923992

102617444

102614302

102624606

100805380

100799499

100794899

100258055

100261485

100244335

7495478

7477619

7471947

11434330

11411335

11408400

101259367

101250396

101265673

102589959

102587653

102583347

107812383

107799325

107769876

4325911

4332845

4337480

100282475

100193930

103630411

123086598

123145219

123162143

123444802

123424817

123412510

8070670

8071183

8082966

100835634

100825898

100844621

5722586

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TLP6 (ath-m.4.lig coexpression data)

Top 50 enrichment test to TLP6 (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**