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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   VPS45   vacuolar protein sorting 45 
 ath-u.5   VPS45   vacuolar protein sorting 45 
 ath-r.7   VPS45   vacuolar protein sorting 45 
 ath-m.9   VPS45   vacuolar protein sorting 45 
 ath-e.2   VPS45   vacuolar protein sorting 45 
 ath-m.4.bio   VPS45   vacuolar protein sorting 45 
 ath-m.4.hor   VPS45   vacuolar protein sorting 45 
 ath-m.4.str   VPS45   vacuolar protein sorting 45 
 ath-m.4.tis   VPS45   vacuolar protein sorting 45 
 bra-r.6   103853060   vacuolar protein sorting-associated protein 45 homolog 
 bna-r.1   106396901   vacuolar protein sorting-associated protein 45 homolog 
 bna-r.1   106411160   vacuolar protein sorting-associated protein 45 homolog 
 bna-r.1   106451253   vacuolar protein sorting-associated protein 45 homolog 
 ghi-r.1   107950689   vacuolar protein sorting-associated protein 45 homolog 
 ghi-r.1   107951986   vacuolar protein sorting-associated protein 45 homolog 
 cit-r.1   102620336   vacuolar protein sorting-associated protein 45 homolog 
 gma-u.5   100802965   vacuolar protein sorting-associated protein 45 homolog 
 gma-u.5   100782786   vacuolar protein sorting-associated protein 45 homolog 
 vvi-u.5   100243832   vacuolar protein sorting-associated protein 45 homolog 
 ppo-u.5   7492449   vacuolar protein sorting-associated protein 45 homolog 
 ppo-u.5   7466414   vacuolar protein sorting-associated protein 45 homolog 
 mtr-u.5   25489769   vacuolar protein sorting-associated protein 45 homolog 
 sly-u.5   101264116   vacuolar protein sorting-associated protein 45 homolog 
 sot-r.1   102593164   vacuolar protein sorting-associated protein 45 homolog 
 nta-r.1   107795570   vacuolar protein sorting-associated protein 45 homolog 
 nta-r.1   107766753   vacuolar protein sorting-associated protein 45 homolog 
 osa-u.5   4329228   vacuolar protein sorting-associated protein 45 homolog 
 zma-u.5   100286026   uncharacterized LOC100286026 
 tae-r.2   123052920   vacuolar protein sorting-associated protein 45 homolog 
 tae-r.2   123045081   vacuolar protein sorting-associated protein 45 homolog 
 tae-r.2   123188877   vacuolar protein sorting-associated protein 45 homolog 
 hvu-r.1   123426321   vacuolar protein sorting-associated protein 45 homolog 
 sbi-r.1   8070030   vacuolar protein sorting-associated protein 45 homolog 
 bdi-r.1   100824201   vacuolar protein sorting-associated protein 45 homolog 
 cre-r.1   CHLRE_07g333950v5   uncharacterized protein 

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Top 50 coexpressed genes to VPS45 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VPS45 (ath-m.4.lig coexpression data)

CoexMap"844050"


athVPS45 | Entrez gene ID : 844050      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04144 [list] [network] Endocytosis (156 genes)
GO BP
GO:0031338 [list] [network] regulation of vesicle fusion  (2 genes)  IMP  
GO:0030307 [list] [network] positive regulation of cell growth  (18 genes)  IMP  
GO:2000067 [list] [network] regulation of root morphogenesis  (33 genes)  IMP  
GO:2000012 [list] [network] regulation of auxin polar transport  (39 genes)  IMP  
GO:0009846 [list] [network] pollen germination  (77 genes)  IMP  
GO:0006886 [list] [network] intracellular protein transport  (149 genes)  IGI IMP  
GO:0016192 [list] [network] vesicle-mediated transport  (246 genes)  IMP  
GO CC
GO:0031201 [list] [network] SNARE complex  (8 genes)  IDA  
GO:0005769 [list] [network] early endosome  (26 genes)  IDA  
GO:0009705 [list] [network] plant-type vacuole membrane  (117 genes)  IDA  
GO:0005802 [list] [network] trans-Golgi network  (279 genes)  IDA NAS  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  ISM  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_565150.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_E.R. 2,  cyto_plas 2  (predict for NP_565150.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_565150.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
VPS45
ath-u.5
for
VPS45
ath-r.7
for
VPS45
ath-m.9
for
VPS45
ath-e.2
for
VPS45
ath-m.4.bio
for
VPS45
ath-m.4.hor
for
VPS45
ath-m.4.str
for
VPS45
ath-m.4.tis
for
VPS45
bra-r.6
for
103853060
bna-r.1
for
106396901
bna-r.1
for
106411160
bna-r.1
for
106451253
ghi-r.1
for
107950689
ghi-r.1
for
107951986
cit-r.1
for
102620336
gma-u.5
for
100802965
gma-u.5
for
100782786
vvi-u.5
for
100243832
ppo-u.5
for
7492449
ppo-u.5
for
7466414
mtr-u.5
for
25489769
sly-u.5
for
101264116
sot-r.1
for
102593164
nta-r.1
for
107795570
nta-r.1
for
107766753
osa-u.5
for
4329228
zma-u.5
for
100286026
tae-r.2
for
123052920
tae-r.2
for
123045081
tae-r.2
for
123188877
hvu-r.1
for
123426321
sbi-r.1
for
8070030
bdi-r.1
for
100824201
cre-r.1
for
CHLRE_07g333950v5


Ortholog ID: 9298
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol VPS45 LOC103853060 LOC106396901 LOC106411160 LOC106451253 LOC107950689 LOC107951986 LOC102620336 LOC100802965 LOC100782786 LOC100243832 LOC7492449 LOC7466414 LOC25489769 LOC101264116 LOC102593164 LOC107795570 LOC107766753 LOC4329228 LOC100286026 LOC123052920 LOC123045081 LOC123188877 LOC123426321 LOC8070030 LOC100824201 CHLRE_07g333950v5
Function* vacuolar protein sorting 45 vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog uncharacterized LOC100286026 vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog vacuolar protein sorting-associated protein 45 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00440 Phosphonate and phosphinate metabolism 4
ghi00564 Glycerophospholipid metabolism 4
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00440 Phosphonate and phosphinate metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit04144 Endocytosis 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00785 Lipoic acid metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 3
mtr04142 Lysosome 2
mtr05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 3
nta03015 mRNA surveillance pathway 2
nta04136 Autophagy - other 2
nta04382 Cornified envelope formation 2
nta04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 10
tae04142 Lysosome 8
tae05100 Bacterial invasion of epithelial cells 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 10
tae04142 Lysosome 7
tae05100 Bacterial invasion of epithelial cells 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 12
tae04142 Lysosome 6
tae05100 Bacterial invasion of epithelial cells 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04142 Lysosome 2
hvu05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04142 Lysosome 2
sbi05100 Bacterial invasion of epithelial cells 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 4
cre04130 SNARE interactions in vesicular transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844050 103853060 106396901 106411160 106451253 107950689 107951986 102620336 100802965 100782786 100243832 7492449 7466414 25489769 101264116 102593164 107795570 107766753 4329228 100286026 123052920 123045081 123188877 123426321 8070030 100824201 5725689
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