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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   ABCA1   ATP-binding cassette A1 
 ath-u.5   ABCA1   ATP-binding cassette A1 
 ath-r.7   ABCA1   ATP-binding cassette A1 
 ath-m.9   ABCA1   ATP-binding cassette A1 
 ath-e.2   ABCA1   ATP-binding cassette A1 
 ath-m.4.bio   ABCA1   ATP-binding cassette A1 
 ath-m.4.hor   ABCA1   ATP-binding cassette A1 
 ath-m.4.lig   ABCA1   ATP-binding cassette A1 
 ath-m.4.tis   ABCA1   ATP-binding cassette A1 
 bra-r.6   103857992   ABC transporter A family member 1 
 bna-r.1   106428160   ABC transporter A family member 1 
 bna-r.1   106352805   ABC transporter A family member 1 
 ghi-r.1   107918156   ABC transporter A family member 1 
 ghi-r.1   107922075   ABC transporter A family member 1 
 cit-r.1   102625041   ABC transporter A family member 1 
 gma-u.5   100803263   ABC transporter A family member 1 
 vvi-u.5   100265905   ABC transporter A family member 1 
 ppo-u.5   7496128   ABC transporter A family member 1 
 mtr-u.5   11413324   ABC transporter A family member 1 
 sly-u.5   ABCA1   ABC transporter A family member 1 
 sot-r.1   102601830   ABC transporter A family member 1 
 nta-r.1   107781095   ABC transporter A family member 1 
 nta-r.1   107800372   ABC transporter A family member 1 
 cre-r.1   CHLRE_03g151400v5   uncharacterized protein 

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Top 50 coexpressed genes to ABCA1 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ABCA1 (ath-m.4.str coexpression data)

CoexMap"818768"


athABCA1 | Entrez gene ID : 818768      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta cre sbi osa tae hvu zma bdi
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath02010 [list] [network] ABC transporters (68 genes)
GO BP
GO CC
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0015171 [list] [network] amino acid transmembrane transporter activity  (78 genes)  ISS  
GO:0042626 [list] [network] ATPase-coupled transmembrane transporter activity  (192 genes)  ISS  
Protein NP_001031526.1 [sequence] [blastp]
NP_850354.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  plas 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001031526.1)
chlo 5,  mito 2,  plas 2,  mito_plas 2  (predict for NP_850354.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_001031526.1)
mito 8  (predict for NP_850354.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
ABCA1
ath-u.5
for
ABCA1
ath-r.7
for
ABCA1
ath-m.9
for
ABCA1
ath-e.2
for
ABCA1
ath-m.4.bio
for
ABCA1
ath-m.4.hor
for
ABCA1
ath-m.4.lig
for
ABCA1
ath-m.4.tis
for
ABCA1
bra-r.6
for
103857992
bna-r.1
for
106428160
bna-r.1
for
106352805
ghi-r.1
for
107918156
ghi-r.1
for
107922075
cit-r.1
for
102625041
gma-u.5
for
100803263
vvi-u.5
for
100265905
ppo-u.5
for
7496128
mtr-u.5
for
11413324
sly-u.5
for
ABCA1
sot-r.1
for
102601830
nta-r.1
for
107781095
nta-r.1
for
107800372
cre-r.1
for
CHLRE_03g151400v5


Ortholog ID: 13155
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta cre
Symbol ABCA1 LOC103857992 LOC106428160 LOC106352805 LOC107918156 LOC107922075 LOC102625041 LOC100803263 LOC100265905 LOC7496128 LOC11413324 ABCA1 LOC102601830 LOC107781095 LOC107800372 CHLRE_03g151400v5
Function* ATP-binding cassette A1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 5
bna04120 Ubiquitin mediated proteolysis 4
bna04146 Peroxisome 3
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 5
bna04120 Ubiquitin mediated proteolysis 4
bna04146 Peroxisome 3
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi04141 Protein processing in endoplasmic reticulum 3
ghi02010 ABC transporters 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 3
gma00230 Purine metabolism 2
gma00232 Caffeine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04136 Autophagy - other 2
ppo04518 Integrin signaling 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 4
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818768 103857992 106428160 106352805 107918156 107922075 102625041 100803263 100265905 7496128 11413324 101266927 102601830 107781095 107800372 5721129
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