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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   ABCA1   ABC transporter A family member 1 
 sly-r.6   ABCA1   ABC transporter A family member 1 
 sly-m.5   ABCA1   ABC transporter A family member 1 
 ath-u.5   ABCA1   ATP-binding cassette A1 
 gma-u.5   100803263   ABC transporter A family member 1 
 vvi-u.5   100265905   ABC transporter A family member 1 
 ppo-u.5   7496128   ABC transporter A family member 1 
 mtr-u.5   11413324   ABC transporter A family member 1 

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Top 50 coexpressed genes to ABCA1 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ABCA1 (sly-u.5 coexpression data)

CoexMap"101266927"


slyABCA1 | Entrez gene ID : 101266927    
Species sly ath gma vvi ppo mtr hvu zma bna cit bra ghi osa sbi bdi nta tae cre sot
Paralog 3 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly02010 [list] [network] ABC transporters (80 genes)
GO BP
GO:0006869 [list] [network] lipid transport  (84 genes)  IEA  
GO:0055085 [list] [network] transmembrane transport  (966 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (3085 genes)  IEA  
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0005319 [list] [network] lipid transporter activity  (45 genes)  IEA  
GO:0140359 [list] [network] ABC-type transporter activity  (114 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (408 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004236604.2 [sequence] [blastp]
XP_025886411.2 [sequence] [blastp]
XP_069153137.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  plas 3,  cyto_nucl 3,  nucl_plas 3,  cyto_plas 3  (predict for XP_004236604.2)
nucl 6,  plas 4  (predict for XP_025886411.2)
cyto 3,  plas 3,  cyto_plas 3,  nucl 2,  E.R._plas 2,  cyto_E.R. 2  (predict for XP_069153137.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004236604.2)
other 6,  scret 3  (predict for XP_025886411.2)
other 9  (predict for XP_069153137.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
ABCA1
sly-r.6
for
ABCA1
sly-m.5
for
ABCA1
ath-u.5
for
ABCA1
gma-u.5
for
100803263
vvi-u.5
for
100265905
ppo-u.5
for
7496128
mtr-u.5
for
11413324


Ortholog ID: 13155
Species sly sot nta nta ath gma bra vvi ppo mtr ghi ghi bna bna cit cre
Symbol ABCA1 LOC102601830 LOC107800372 LOC107781095 ABCA1 LOC100803263 LOC103857992 LOC100265905 LOC7496128 LOC11413324 LOC107918156 LOC107922075 LOC106428160 LOC106352805 LOC102625041 CHLRE_03g151400v5
Function* ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ATP-binding cassette A1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 ABC transporter A family member 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 4
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 3
gma00230 Purine metabolism 2
gma00232 Caffeine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04136 Autophagy - other 2
ppo04518 Integrin signaling 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi04141 Protein processing in endoplasmic reticulum 3
ghi02010 ABC transporters 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 5
bna04120 Ubiquitin mediated proteolysis 4
bna04146 Peroxisome 3
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 5
bna04120 Ubiquitin mediated proteolysis 4
bna04146 Peroxisome 3
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101266927 102601830 107800372 107781095 818768 100803263 103857992 100265905 7496128 11413324 107918156 107922075 106428160 106352805 102625041 5721129
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