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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   SVR3   elongation factor family protein 
 ath-u.5   SVR3   elongation factor family protein 
 ath-r.7   SVR3   elongation factor family protein 
 ath-m.9   SVR3   elongation factor family protein 
 ath-e.2   SVR3   elongation factor family protein 
 ath-m.4.bio   SVR3   elongation factor family protein 
 ath-m.4.hor   SVR3   elongation factor family protein 
 ath-m.4.lig   SVR3   elongation factor family protein 
 ath-m.4.tis   SVR3   elongation factor family protein 
 bra-r.6   103850889   putative elongation factor TypA-like SVR3, chloroplastic 
 bra-r.6   103846551   putative elongation factor TypA-like SVR3, chloroplastic 
 bna-r.1   106384326   putative elongation factor TypA-like SVR3, chloroplastic 
 bna-r.1   106372278   putative elongation factor TypA-like SVR3, chloroplastic 
 bna-r.1   125579044   putative elongation factor TypA-like SVR3, chloroplastic 
 ghi-r.1   107945364   putative elongation factor TypA-like SVR3, chloroplastic 
 ghi-r.1   107939239   putative elongation factor TypA-like SVR3, chloroplastic 
 cit-r.1   102622117   putative elongation factor TypA-like SVR3, chloroplastic 
 gma-u.5   100794574   putative elongation factor TypA-like SVR3, chloroplastic 
 gma-u.5   100785222   putative elongation factor TypA-like SVR3, chloroplastic 
 vvi-u.5   100264026   putative elongation factor TypA-like SVR3, chloroplastic 
 ppo-u.5   7473632   putative elongation factor TypA-like SVR3, chloroplastic 
 mtr-u.5   25483409   putative elongation factor TypA-like SVR3, chloroplastic 
 sly-u.5   101249052   putative elongation factor TypA-like SVR3, chloroplastic 
 sot-r.1   102598186   GTP-binding protein TypA/BipA homolog 
 nta-r.1   107814670   putative elongation factor TypA-like SVR3, chloroplastic 
 nta-r.1   107815102   putative elongation factor TypA-like SVR3, chloroplastic 
 osa-u.5   4329037   putative elongation factor TypA-like SVR3, chloroplastic 
 zma-u.5   100857077   GTP-binding protein TypA 
 tae-r.2   123144539   putative elongation factor TypA-like SVR3, chloroplastic 
 tae-r.2   123137137   putative elongation factor TypA-like SVR3, chloroplastic 
 tae-r.2   123127413   putative elongation factor TypA-like SVR3, chloroplastic 
 hvu-r.1   123401218   putative elongation factor TypA-like SVR3, chloroplastic 
 sbi-r.1   8081627   putative elongation factor TypA-like SVR3, chloroplastic 
 bdi-r.1   100827491   putative elongation factor TypA-like SVR3, chloroplastic 
 cre-r.1   CHLRE_07g335200v5   uncharacterized protein 

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Top 50 coexpressed genes to SVR3 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SVR3 (ath-m.4.str coexpression data)

CoexMap"831209"


athSVR3 | Entrez gene ID : 831209      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0050821 [list] [network] protein stabilization  (15 genes)  IMP  
GO:0031425 [list] [network] chloroplast RNA processing  (28 genes)  IMP  
GO:0000302 [list] [network] response to reactive oxygen species  (142 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (183 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_568289.3 [sequence] [blastp]
NP_851035.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_568289.3)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_851035.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_568289.3)
chlo 7  (predict for NP_851035.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
SVR3
ath-u.5
for
SVR3
ath-r.7
for
SVR3
ath-m.9
for
SVR3
ath-e.2
for
SVR3
ath-m.4.bio
for
SVR3
ath-m.4.hor
for
SVR3
ath-m.4.lig
for
SVR3
ath-m.4.tis
for
SVR3
bra-r.6
for
103850889
bra-r.6
for
103846551
bna-r.1
for
106384326
bna-r.1
for
106372278
bna-r.1
for
125579044
ghi-r.1
for
107945364
ghi-r.1
for
107939239
cit-r.1
for
102622117
gma-u.5
for
100794574
gma-u.5
for
100785222
vvi-u.5
for
100264026
ppo-u.5
for
7473632
mtr-u.5
for
25483409
sly-u.5
for
101249052
sot-r.1
for
102598186
nta-r.1
for
107814670
nta-r.1
for
107815102
osa-u.5
for
4329037
zma-u.5
for
100857077
tae-r.2
for
123144539
tae-r.2
for
123137137
tae-r.2
for
123127413
hvu-r.1
for
123401218
sbi-r.1
for
8081627
bdi-r.1
for
100827491
cre-r.1
for
CHLRE_07g335200v5


Ortholog ID: 9093
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol SVR3 LOC103850889 LOC103846551 LOC106384326 LOC106372278 LOC125579044 LOC107945364 LOC107939239 LOC102622117 LOC100794574 LOC100785222 LOC100264026 LOC7473632 LOC25483409 LOC101249052 LOC102598186 LOC107814670 LOC107815102 LOC4329037 LOC100857077 LOC123144539 LOC123137137 LOC123127413 LOC123401218 LOC8081627 LOC100827491 CHLRE_07g335200v5
Function* elongation factor family protein putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic GTP-binding protein TypA/BipA homolog putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic GTP-binding protein TypA putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic putative elongation factor TypA-like SVR3, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
bra00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00030 Pentose phosphate pathway 3
nta00230 Purine metabolism 3
nta01200 Carbon metabolism 3
nta01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00030 Pentose phosphate pathway 2
nta00230 Purine metabolism 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00450 Selenocompound metabolism 2
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00450 Selenocompound metabolism 3
tae00230 Purine metabolism 2
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00450 Selenocompound metabolism 3
tae00230 Purine metabolism 2
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 3
cre01200 Carbon metabolism 3
cre01230 Biosynthesis of amino acids 3
cre00230 Purine metabolism 2
cre00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831209 103850889 103846551 106384326 106372278 125579044 107945364 107939239 102622117 100794574 100785222 100264026 7473632 25483409 101249052 102598186 107814670 107815102 4329037 100857077 123144539 123137137 123127413 123401218 8081627 100827491 5725704
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