ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107945364	putative elongation factor TypA-like SVR3, chloroplastic
ghi-r.1	107939239	putative elongation factor TypA-like SVR3, chloroplastic
ath-u.5	SVR3	elongation factor family protein
bra-r.6	103850889	putative elongation factor TypA-like SVR3, chloroplastic
bra-r.6	103846551	putative elongation factor TypA-like SVR3, chloroplastic
bna-r.1	106384326	putative elongation factor TypA-like SVR3, chloroplastic
bna-r.1	106372278	putative elongation factor TypA-like SVR3, chloroplastic
bna-r.1	125579044	putative elongation factor TypA-like SVR3, chloroplastic
cit-r.1	102622117	putative elongation factor TypA-like SVR3, chloroplastic
gma-u.5	100794574	putative elongation factor TypA-like SVR3, chloroplastic
gma-u.5	100785222	putative elongation factor TypA-like SVR3, chloroplastic
vvi-u.5	100264026	putative elongation factor TypA-like SVR3, chloroplastic
ppo-u.5	7473632	putative elongation factor TypA-like SVR3, chloroplastic
mtr-u.5	25483409	putative elongation factor TypA-like SVR3, chloroplastic
sly-u.5	101249052	putative elongation factor TypA-like SVR3, chloroplastic
sot-r.1	102598186	GTP-binding protein TypA/BipA homolog
nta-r.1	107814670	putative elongation factor TypA-like SVR3, chloroplastic
nta-r.1	107815102	putative elongation factor TypA-like SVR3, chloroplastic
osa-u.5	4329037	putative elongation factor TypA-like SVR3, chloroplastic
zma-u.5	100857077	GTP-binding protein TypA
tae-r.2	123137137	putative elongation factor TypA-like SVR3, chloroplastic
tae-r.2	123127413	putative elongation factor TypA-like SVR3, chloroplastic
tae-r.2	123144539	putative elongation factor TypA-like SVR3, chloroplastic
hvu-r.1	123401218	putative elongation factor TypA-like SVR3, chloroplastic
sbi-r.1	8081627	putative elongation factor TypA-like SVR3, chloroplastic
bdi-r.1	100827491	putative elongation factor TypA-like SVR3, chloroplastic
cre-r.1	CHLRE_07g335200v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:1990904 [list] [network] ribonucleoprotein complex	(1534 genes)	IEA
GO:0005829 [list] [network] cytosol	(2580 genes)	IEA

GO MF

GO:0003924 [list] [network] GTPase activity	(613 genes)	IEA
GO:0005525 [list] [network] GTP binding	(687 genes)	IEA

Protein

XP_016734827.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 1

(predict for XP_016734827.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_016734827.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107945364	ghi-r.1 for 107939239	ath-u.5 for SVR3	bra-r.6 for 103850889	bra-r.6 for 103846551	bna-r.1 for 106384326	bna-r.1 for 106372278	bna-r.1 for 125579044	cit-r.1 for 102622117	gma-u.5 for 100794574	gma-u.5 for 100785222	vvi-u.5 for 100264026	ppo-u.5 for 7473632	mtr-u.5 for 25483409	sly-u.5 for 101249052	sot-r.1 for 102598186	nta-r.1 for 107814670	nta-r.1 for 107815102	osa-u.5 for 4329037	zma-u.5 for 100857077	tae-r.2 for 123137137	tae-r.2 for 123127413	tae-r.2 for 123144539	hvu-r.1 for 123401218	sbi-r.1 for 8081627	bdi-r.1 for 100827491	cre-r.1 for CHLRE_07g335200v5

Ortholog

Ortholog ID: 9093

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SVR3

Function^*

putative elongation factor TypA-like SVR3, chloroplastic

elongation factor family protein

putative elongation factor TypA-like SVR3, chloroplastic

GTP-binding protein TypA/BipA homolog

putative elongation factor TypA-like SVR3, chloroplastic

GTP-binding protein TypA

putative elongation factor TypA-like SVR3, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2
bra00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00710	Carbon fixation by Calvin cycle	2
cit01200	Carbon metabolism	2
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03060	Protein export	2
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00030	Pentose phosphate pathway	3
nta00230	Purine metabolism	3
nta01200	Carbon metabolism	3
nta01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00030	Pentose phosphate pathway	2
nta00230	Purine metabolism	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	3
osa00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
osa03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00450	Selenocompound metabolism	3
tae00230	Purine metabolism	2
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00450	Selenocompound metabolism	3
tae00230	Purine metabolism	2
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00450	Selenocompound metabolism	2
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	2
hvu00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00710	Carbon fixation by Calvin cycle	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00710	Carbon fixation by Calvin cycle	3
cre01200	Carbon metabolism	3
cre01230	Biosynthesis of amino acids	3
cre00230	Purine metabolism	2
cre00030	Pentose phosphate pathway	2

Expression

Expression pattern

Entrez Gene ID^*

107945364

107939239

831209

103850889

103846551

106384326

106372278

125579044

102622117

100794574

100785222

100264026

7473632

25483409

101249052

102598186

107814670

107815102

4329037

100857077

123137137

123127413

123144539

123401218

8081627

100827491

5725704

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107945364 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107945364 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	2	3	1	2	1	1	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107945364 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107945364 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**