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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   SAG24   senescence associated gene 24 
 ath-u.5   SAG24   senescence associated gene 24 
 ath-r.7   SAG24   senescence associated gene 24 
 ath-m.9   SAG24   senescence associated gene 24 
 ath-e.2   SAG24   senescence associated gene 24 
 ath-m.4.bio   SAG24   senescence associated gene 24 
 ath-m.4.hor   SAG24   senescence associated gene 24 
 ath-m.4.lig   SAG24   senescence associated gene 24 
 ath-m.4.tis   SAG24   senescence associated gene 24 
 ath-u.5   RPL10B   Ribosomal protein L16p/L10e family protein 
 ath-u.5   SAC52   Ribosomal protein L16p/L10e family protein 
 bra-r.6   103830915   60S ribosomal protein L10-3 
 bra-r.6   103831514   60S ribosomal protein L10-3 
 bra-r.6   103842977   60S ribosomal protein L10-1 
 bna-r.1   106365367   60S ribosomal protein L10-1 
 bna-r.1   106432562   60S ribosomal protein L10-3-like 
 bna-r.1   106346479   60S ribosomal protein L10-1-like 
 ghi-r.1   107896565   60S ribosomal protein L10 
 ghi-r.1   107904859   60S ribosomal protein L10 
 ghi-r.1   107936005   60S ribosomal protein L10 
 cit-r.1   102626628   60S ribosomal protein L10 
 cit-r.1   102625379   60S ribosomal protein L10 
 gma-u.5   100779884   60S ribosomal protein L10 
 gma-u.5   100815571   60S ribosomal protein L10 
 gma-u.5   100305619   uncharacterized LOC100305619 
 vvi-u.5   100262228   large ribosomal subunit protein uL16 
 vvi-u.5   100241995   large ribosomal subunit protein uL16 
 ppo-u.5   7494652   60S ribosomal protein L10 
 mtr-u.5   11409699   60S ribosomal protein L10 
 mtr-u.5   25489847   60S ribosomal protein L10 
 mtr-u.5   25487737   60S ribosomal protein L10 
 sly-u.5   ACI29   60S ribosomal protein L10 
 sly-u.5   101263720   large ribosomal subunit protein uL16 
 sly-u.5   101264022   large ribosomal subunit protein uL16 
 sot-r.1   102582711   60S ribosomal protein L10-like 
 sot-r.1   102583043   60S ribosomal protein L10-like 
 sot-r.1   102580084   60S ribosomal protein L10-like 
 nta-r.1   107827878   large ribosomal subunit protein uL16 
 nta-r.1   107796739   large ribosomal subunit protein uL16 
 nta-r.1   107782598   large ribosomal subunit protein uL16 
 osa-u.5   4350098   60S ribosomal protein L10-1-like 
 osa-u.5   4337928   60S ribosomal protein L10-2-like 
 zma-u.5   100282959   60S ribosomal protein L10-3 
 zma-u.5   542298   60S ribosomal protein L10-3 
 tae-r.2   542899   60S ribosomal protein L10-2 
 tae-r.2   123086561   60S ribosomal protein L10-1 
 tae-r.2   123099935   60S ribosomal protein L10 
 hvu-r.1   123447866   60S ribosomal protein L10-1-like 
 hvu-r.1   123426547   60S ribosomal protein L10-2 
 sbi-r.1   8062999   60S ribosomal protein L10 
 sbi-r.1   8073823   60S ribosomal protein L10-1 
 sbi-r.1   8082350   60S ribosomal protein L10 
 bdi-r.1   100823401   60S ribosomal protein L10-1 
 bdi-r.1   100840282   60S ribosomal protein L10 
 cre-r.1   CHLRE_09g388200v5   ribosomal protein L10 

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Top 50 coexpressed genes to SAG24 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SAG24 (ath-m.4.str coexpression data)

CoexMap"842976"


athSAG24 | Entrez gene ID : 842976    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 2 1 3 3 3 3 2 2 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0010224 [list] [network] response to UV-B  (85 genes)  IEP  
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO:0032502 [list] [network] developmental process  (3135 genes)  IMP  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (124 genes)  HDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005840 [list] [network] ribosome  (328 genes)  IPI  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  RCA  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_564878.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo_mito 4,  chlo 3,  mito 3,  cyto 3  (predict for NP_564878.1)
Subcellular
localization
TargetP
mito 7,  other 5  (predict for NP_564878.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
SAG24
ath-u.5
for
SAG24
ath-r.7
for
SAG24
ath-m.9
for
SAG24
ath-e.2
for
SAG24
ath-m.4.bio
for
SAG24
ath-m.4.hor
for
SAG24
ath-m.4.lig
for
SAG24
ath-m.4.tis
for
SAG24
ath-u.5
for
RPL10B
ath-u.5
for
SAC52
bra-r.6
for
103830915
bra-r.6
for
103831514
bra-r.6
for
103842977
bna-r.1
for
106365367
bna-r.1
for
106432562
bna-r.1
for
106346479
ghi-r.1
for
107896565
ghi-r.1
for
107904859
ghi-r.1
for
107936005
cit-r.1
for
102626628
cit-r.1
for
102625379
gma-u.5
for
100779884
gma-u.5
for
100815571
gma-u.5
for
100305619
vvi-u.5
for
100262228
vvi-u.5
for
100241995
ppo-u.5
for
7494652
mtr-u.5
for
11409699
mtr-u.5
for
25489847
mtr-u.5
for
25487737
sly-u.5
for
ACI29
sly-u.5
for
101263720
sly-u.5
for
101264022
sot-r.1
for
102582711
sot-r.1
for
102583043
sot-r.1
for
102580084
nta-r.1
for
107827878
nta-r.1
for
107796739
nta-r.1
for
107782598
osa-u.5
for
4350098
osa-u.5
for
4337928
zma-u.5
for
100282959
zma-u.5
for
542298
tae-r.2
for
542899
tae-r.2
for
123086561
tae-r.2
for
123099935
hvu-r.1
for
123447866
hvu-r.1
for
123426547
sbi-r.1
for
8062999
sbi-r.1
for
8073823
sbi-r.1
for
8082350
bdi-r.1
for
100823401
bdi-r.1
for
100840282
cre-r.1
for
CHLRE_09g388200v5


Ortholog ID: 1947
Species ath ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol SAG24 RPL10B SAC52 LOC103830915 LOC103872125 LOC106432562 LOC106394929 LOC106397034 LOC107904859 LOC107936005 LOC107962208 LOC102626628 LOC102625379 LOC100779884 LOC100815571 LOC100305619 LOC100262228 LOC100241995 LOC7494652 LOC11409699 LOC25489847 LOC25487737 ACI29 LOC101263720 LOC101264022 LOC102582711 LOC102583043 LOC102580084 LOC107796739 LOC107766087 LOC107782233 LOC4350098 LOC4337928 LOC100282959 LOC542298 LOC542899 LOC123099935 LOC123039953 LOC123447866 LOC123426547 LOC8062999 LOC8073823 LOC8082350 LOC100823401 LOC100840282 CHLRE_09g388200v5
Function* senescence associated gene 24 Ribosomal protein L16p/L10e family protein Ribosomal protein L16p/L10e family protein 60S ribosomal protein L10-3 60S ribosomal protein L10-1 60S ribosomal protein L10-3-like 60S ribosomal protein L10-3-like 60S ribosomal protein L10-1-like 60S ribosomal protein L10 60S ribosomal protein L10 60S ribosomal protein L10 60S ribosomal protein L10 60S ribosomal protein L10 60S ribosomal protein L10 60S ribosomal protein L10 uncharacterized LOC100305619 large ribosomal subunit protein uL16 large ribosomal subunit protein uL16 60S ribosomal protein L10 60S ribosomal protein L10 60S ribosomal protein L10 60S ribosomal protein L10 60S ribosomal protein L10 large ribosomal subunit protein uL16 large ribosomal subunit protein uL16 60S ribosomal protein L10-like 60S ribosomal protein L10-like 60S ribosomal protein L10-like large ribosomal subunit protein uL16 large ribosomal subunit protein uL16-like large ribosomal subunit protein uL16 60S ribosomal protein L10-1-like 60S ribosomal protein L10-2-like 60S ribosomal protein L10-3 60S ribosomal protein L10-3 60S ribosomal protein L10-2 60S ribosomal protein L10 60S ribosomal protein L10-2 60S ribosomal protein L10-1-like 60S ribosomal protein L10-2 60S ribosomal protein L10 60S ribosomal protein L10-1 60S ribosomal protein L10 60S ribosomal protein L10-1 60S ribosomal protein L10 ribosomal protein L10
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath00480 Glutathione metabolism 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
ath01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 5
bra00020 Citrate cycle (TCA cycle) 2
bra01200 Carbon metabolism 2
bra01210 2-Oxocarboxylic acid metabolism 2
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna00261 Monobactam biosynthesis 3
bna00300 Lysine biosynthesis 3
bna01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 8
ghi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 10
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
cit03040 Spliceosome 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
gma00592 alpha-Linolenic acid metabolism 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00040 Pentose and glucuronate interconversions 2
gma00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
gma00230 Purine metabolism 2
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00480 Glutathione metabolism 10
mtr00902 Monoterpenoid biosynthesis 3
mtr01240 Biosynthesis of cofactors 2
mtr00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae04120 Ubiquitin mediated proteolysis 3
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
tae03015 mRNA surveillance pathway 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae04120 Ubiquitin mediated proteolysis 3
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 17
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 18
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842976 837036 837993 103830915 103872125 106432562 106394929 106397034 107904859 107936005 107962208 102626628 102625379 100779884 100815571 100305619 100262228 100241995 7494652 11409699 25489847 25487737 778217 101263720 101264022 102582711 102583043 102580084 107796739 107766087 107782233 4350098 4337928 100282959 542298 542899 123099935 123039953 123447866 123426547 8062999 8073823 8082350 100823401 100840282 5720023
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