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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-u.5   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-r.7   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-m.9   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-e.2   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-m.4.bio   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-m.4.hor   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-m.4.lig   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-m.4.str   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-u.5   LSM6A   Small nuclear ribonucleoprotein family protein 
 bra-r.6   103862924   sm-like protein LSM6A 
 bra-r.6   103841827   sm-like protein LSM6A 
 bra-r.6   103830231   sm-like protein LSM36B 
 bna-r.1   106445123   sm-like protein LSM6A 
 bna-r.1   106353142   sm-like protein LSM36B 
 bna-r.1   106406610   sm-like protein LSM36B 
 ghi-r.1   107927439   sm-like protein LSM36B 
 ghi-r.1   121206315   sm-like protein LSM36B 
 ghi-r.1   107928430   sm-like protein LSM36B 
 cit-r.1   102615299   sm-like protein LSM36B 
 gma-u.5   100797765   sm-like protein LSM6A 
 gma-u.5   100306112   uncharacterized LOC100306112 
 vvi-u.5   100259432   sm-like protein LSM36B 
 ppo-u.5   7464596   sm-like protein LSM36B 
 ppo-u.5   7472468   sm-like protein LSM36B 
 mtr-u.5   11420271   sm-like protein LSM6A 
 sly-u.5   101268815   sm-like protein LSM36B 
 sot-r.1   102588530   sm-like protein LSM36B 
 nta-r.1   107793699   sm-like protein LSM36B 
 nta-r.1   107761481   sm-like protein LSM36B 
 osa-u.5   112936013   uncharacterized LOC112936013 
 osa-u.5   4329449   U6 snRNA-associated Sm-like protein LSm6 
 zma-u.5   100192719   Small nuclear ribonucleoprotein F 
 tae-r.2   123189061   U6 snRNA-associated Sm-like protein LSm6 
 tae-r.2   123053147   U6 snRNA-associated Sm-like protein LSm6 
 tae-r.2   123045311   U6 snRNA-associated Sm-like protein LSm6 
 hvu-r.1   123426544   U6 snRNA-associated Sm-like protein LSm6 
 sbi-r.1   8070969   U6 snRNA-associated Sm-like protein LSm6 
 sbi-r.1   110434907   U6 snRNA-associated Sm-like protein LSm6 
 bdi-r.1   100838348   U6 snRNA-associated Sm-like protein LSm6 
 bdi-r.1   100830041   U6 snRNA-associated Sm-like protein LSm6 
 cre-r.1   CHLRE_03g151750v5   uncharacterized protein 

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Top 50 coexpressed genes to LSM6B (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LSM6B (ath-m.4.tis coexpression data)

CoexMap"818985"


athLSM6B | Entrez gene ID : 818985      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 2 1 2 1 1 1 2 2 1 3 1 2 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03018 [list] [network] RNA degradation (114 genes)
ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001078052.1 [sequence] [blastp]
NP_001318419.1 [sequence] [blastp]
NP_181909.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  nucl 2,  extr 1  (predict for NP_001078052.1)
cyto 4,  chlo 2,  nucl 2,  extr 1  (predict for NP_001318419.1)
cyto 4,  chlo 2,  nucl 2,  extr 1  (predict for NP_181909.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078052.1)
other 8  (predict for NP_001318419.1)
other 8  (predict for NP_181909.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
LSM6B
ath-u.5
for
LSM6B
ath-r.7
for
LSM6B
ath-m.9
for
LSM6B
ath-e.2
for
LSM6B
ath-m.4.bio
for
LSM6B
ath-m.4.hor
for
LSM6B
ath-m.4.lig
for
LSM6B
ath-m.4.str
for
LSM6B
ath-u.5
for
LSM6A
bra-r.6
for
103862924
bra-r.6
for
103841827
bra-r.6
for
103830231
bna-r.1
for
106445123
bna-r.1
for
106353142
bna-r.1
for
106406610
ghi-r.1
for
107927439
ghi-r.1
for
121206315
ghi-r.1
for
107928430
cit-r.1
for
102615299
gma-u.5
for
100797765
gma-u.5
for
100306112
vvi-u.5
for
100259432
ppo-u.5
for
7464596
ppo-u.5
for
7472468
mtr-u.5
for
11420271
sly-u.5
for
101268815
sot-r.1
for
102588530
nta-r.1
for
107793699
nta-r.1
for
107761481
osa-u.5
for
112936013
osa-u.5
for
4329449
zma-u.5
for
100192719
tae-r.2
for
123189061
tae-r.2
for
123053147
tae-r.2
for
123045311
hvu-r.1
for
123426544
sbi-r.1
for
8070969
sbi-r.1
for
110434907
bdi-r.1
for
100838348
bdi-r.1
for
100830041
cre-r.1
for
CHLRE_03g151750v5


Ortholog ID: 5488
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol LSM6B LSM6A LOC103862924 LOC103841827 LOC103830231 LOC106445123 LOC106396814 LOC106368431 LOC107927439 LOC121206315 LOC107928430 LOC102615299 LOC100797765 LOC100306112 LOC100259432 LOC7464596 LOC7472468 LOC11420271 LOC101268815 LOC102588530 LOC107793699 LOC107761481 LOC112936013 LOC4329449 LOC100192719 LOC123189061 LOC123053147 LOC123045311 LOC123426544 LOC8070969 LOC110434907 LOC100838348 LOC100830041 CHLRE_03g151750v5
Function* Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein sm-like protein LSM6A sm-like protein LSM6A sm-like protein LSM36B sm-like protein LSM6A sm-like protein LSM6A sm-like protein LSM6A sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM6A uncharacterized LOC100306112 sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM6A sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM36B uncharacterized LOC112936013 U6 snRNA-associated Sm-like protein LSm6 Small nuclear ribonucleoprotein F U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 10
ath03018 RNA degradation 5
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 10
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 3
gma03018 RNA degradation 3
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03040 Spliceosome 5
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
vvi03010 Ribosome 2
vvi03018 RNA degradation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
sly03018 RNA degradation 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03040 Spliceosome 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 14
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 10
zma03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae03018 RNA degradation 4
tae03010 Ribosome 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03018 RNA degradation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
tae03018 RNA degradation 7
tae03010 Ribosome 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03083 Polycomb repressive complex 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 3
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03420 Nucleotide excision repair 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
bdi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03013 Nucleocytoplasmic transport 3
cre03018 RNA degradation 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818985 825150 103862924 103841827 103830231 106445123 106396814 106368431 107927439 121206315 107928430 102615299 100797765 100306112 100259432 7464596 7472468 11420271 101268815 102588530 107793699 107761481 112936013 4329449 100192719 123189061 123053147 123045311 123426544 8070969 110434907 100838348 100830041 5721122
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